CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87097
CDX88160
CDY05377
CDY05474
CDY10771
CDY10772
CDY19813
CDY22597
CDY24724
CDY41739
CDY43007
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11020.1	CDY22597	AT1G32230.1	19548978
AT3G11020.1	CDY41739	AT1G32230.1	19548978
AT3G11020.1	CDY43007	AT1G32230.1	19548978
AT3G11020.1	CDY60257	AT1G32230.1	19548978
AT3G11020.1	CDY67026	AT1G32230.1	19548978
AT3G11020.1	CDY10771	AT2G31070.1	21245844
AT3G11020.1	CDY10772	AT2G31070.1	21245844
AT3G11020.1	CDY24724	AT2G31070.1	21245844
AT3G11020.1	CDX87097	AT5G25160.1	21245844
AT3G11020.1	CDX88160	AT5G25160.1	21245844
AT3G11020.1	CDY05377	AT5G25160.1	21245844
AT3G11020.1	CDY05474	AT5G25160.1	21245844
AT3G11020.1	CDY19813	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001386.1-P	Field mustard	nucleus	97.38	96.88
CDY00719	Canola	nucleus	51.31	82.7
CDY67039	Canola	nucleus	52.88	69.18
CDY36289	Canola	nucleus	52.62	69.07
CDY00987	Canola	nucleus	53.66	65.92
CDY08557	Canola	nucleus	53.14	64.65
AT3G11020.1	Thale cress	nucleus	52.62	60.91
CDY04950	Canola	nucleus	46.34	54.63
CDY52149	Canola	nucleus	45.55	53.05
CDX70151	Canola	nucleus	45.29	52.42
CDX98843	Canola	nucleus	45.55	52.1
CDY33815	Canola	nucleus	13.87	46.09
CDX93190	Canola	nucleus	21.47	38.5
CDY71905	Canola	nucleus	21.2	33.2
CDY70626	Canola	nucleus	17.54	32.84
CDX68128	Canola	nucleus	17.54	32.84
CDY39036	Canola	nucleus	16.75	32.32
CDY20377	Canola	nucleus	16.49	31.82
CDY54455	Canola	nucleus	20.42	31.58
CDY47519	Canola	nucleus	17.02	31.55
CDY64211	Canola	nucleus, plastid	17.02	31.55
CDY52924	Canola	nucleus	26.44	30.06
HORVU6Hr1G050520.2	Barley	nucleus	18.59	29.96
HORVU6Hr1G050500.2	Barley	nucleus	23.3	29.67
KXG21735	Sorghum	nucleus	25.39	28.87
CDY61527	Canola	nucleus	21.47	27.89
CDX72012	Canola	nucleus	19.37	27.11
CDY06088	Canola	nucleus	18.85	26.67
Zm00001d010048_P004	Maize	nucleus	25.13	26.16
CDX70820	Canola	nucleus	19.11	26.07
CDX88955	Canola	nucleus	17.54	25.77
CDY58117	Canola	nucleus	19.11	25.26
TraesCS1B01G235100.2	Wheat	nucleus	25.65	25.26
TraesCS1D01G223600.2	Wheat	nucleus	25.65	25.06
CDY02629	Canola	nucleus	18.85	25.0
CDY52095	Canola	nucleus	17.28	24.81
CDX92610	Canola	nucleus	19.37	24.18
TraesCS1A01G221900.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	25.39	23.83
HORVU1Hr1G060490.5	Barley	plasma membrane	26.96	22.79
CDY25420	Canola	nucleus	19.37	22.56
CDY54991	Canola	nucleus	17.8	20.18
CDY52427	Canola	nucleus	17.02	20.12
CDY07614	Canola	nucleus	16.75	19.05
CDY33814	Canola	nucleus	2.88	12.64

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	GO:A0A078C9Y2	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDX73896
ProteinID:CDX73896	ProteinID:CDX73896.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00111615001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0004EF33F7	SEG:seg	:	:	:	:

Description

BnaA03g31510D

Coordinates

chrLK031800:-:438328..439975

Molecular Weight (calculated)

42825.6 Da

IEP (calculated)

4.225

GRAVY (calculated)

-1.035

Length

382 amino acids

Sequence
(BLAST)

001: MSVNEQTGTD TSSKKRKARA RADGKTVADR LKQWKDHNEG EENKPRGKVH AKGSKKGCMK GKGGPENTKC SYRGVRQRVW GKWVAEIREP NRVSRLWLGT
101: FPTAEEAACA YDEAAKVMYG PSARLNFPGS EVTSTSSQSE VCTVEDKGVV GGGDVCVKRE DGDCESRAVS QIVDVKESCG DGRVQDSSVD ERRDVVNSRL
201: SSYLLDEFEL DYQSRLTKEL EEPKEEEDEV IQPQPEPELT VADYGWPNDM QNSVADYDWP NDMQNELGFW DQDDLFDVDE LLGDLDVDLL TGTDPSQNQN
301: QEQVHPGGND SHPFLLEPHN DICQNQEQVQ PDGDDSHPFQ LEPRDDPCQN QDHVQPGGDD SHPLDLEPHD GHEFFDLSFL DL

Best Arabidopsis Sequence Match ( AT3G11020.1 )
(BLAST)

001: MAVYEQTGTE QPKKRKSRAR AGGLTVADRL KKWKEYNEIV EASAVKEGEK PKRKVPAKGS KKGCMKGKGG PDNSHCSFRG VRQRIWGKWV AEIREPKIGT
101: RLWLGTFPTA EKAASAYDEA ATAMYGSLAR LNFPQSVGSE FTSTSSQSEV CTVENKAVVC GDVCVKHEDT DCESNPFSQI LDVREESCGT RPDSCTVGHQ
201: DMNSSLNYDL LLEFEQQYWG QVLQEKEKPK QEEEEIQQQQ QEQQQQQLQP DLLTVADYGW PWSNDIVNDQ TSWDPNECFD INELLGDLNE PGPHQSQDQN
301: HVNSGSYDLH PLHLEPHDGH EFNGLSSLDI

Arabidopsis Description

DREB2BDehydration-responsive element-binding protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O82133]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.