Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71905 | Canola | nucleus | 80.61 | 97.13 |
| CDY54455 | Canola | nucleus | 81.29 | 96.76 |
| AT2G38340.1 | Thale cress | nucleus | 55.44 | 66.8 |
| CDY33815 | Canola | nucleus | 17.35 | 44.35 |
| CDY39036 | Canola | nucleus | 21.43 | 31.82 |
| CDY20377 | Canola | nucleus | 21.09 | 31.31 |
| CDX68128 | Canola | nucleus | 21.43 | 30.88 |
| CDY70626 | Canola | nucleus | 21.43 | 30.88 |
| CDY47519 | Canola | nucleus | 20.75 | 29.61 |
| CDY64211 | Canola | nucleus, plastid | 20.75 | 29.61 |
| CDX93190 | Canola | nucleus | 21.43 | 29.58 |
| CDY36289 | Canola | nucleus | 27.21 | 27.49 |
| CDY67039 | Canola | nucleus | 26.87 | 27.05 |
| CDY00987 | Canola | nucleus | 27.89 | 26.37 |
| CDY08557 | Canola | nucleus | 27.55 | 25.8 |
| CDY04950 | Canola | nucleus | 27.21 | 24.69 |
| CDY52149 | Canola | nucleus | 27.21 | 24.39 |
| CDY02629 | Canola | nucleus | 23.47 | 23.96 |
| CDY58117 | Canola | nucleus | 23.13 | 23.53 |
| EES18376 | Sorghum | mitochondrion | 19.05 | 23.53 |
| CDY52924 | Canola | nucleus | 26.53 | 23.21 |
| CDX70820 | Canola | nucleus | 22.11 | 23.21 |
| CDX88955 | Canola | nucleus | 20.41 | 23.08 |
| CDX98843 | Canola | nucleus | 26.19 | 23.05 |
| KRH49463 | Soybean | nucleus | 27.55 | 23.01 |
| CDY52095 | Canola | nucleus | 20.41 | 22.56 |
| CDX70151 | Canola | nucleus | 25.17 | 22.42 |
| CDX92610 | Canola | nucleus | 23.13 | 22.22 |
| CDY06088 | Canola | nucleus | 20.41 | 22.22 |
| CDX72012 | Canola | nucleus | 20.41 | 21.98 |
| Zm00001d038446_P001 | Maize | vacuole | 20.75 | 21.86 |
| CDX73896 | Canola | nucleus | 27.89 | 21.47 |
| CDY25420 | Canola | nucleus | 23.13 | 20.73 |
| Os05t0473300-01 | Rice | nucleus | 18.03 | 20.31 |
| Solyc10g076380.1.1 | Tomato | nucleus | 21.77 | 19.81 |
| Solyc10g076370.1.1 | Tomato | nucleus | 26.53 | 19.26 |
| CDY54991 | Canola | nucleus | 20.75 | 18.1 |
| CDY52427 | Canola | nucleus | 19.39 | 17.65 |
| PGSC0003DMT400041064 | Potato | nucleus | 27.21 | 17.51 |
| CDY07614 | Canola | nucleus | 19.39 | 16.96 |
| TraesCS1B01G307000.1 | Wheat | nucleus | 21.09 | 16.1 |
| HORVU1Hr1G070410.1 | Barley | nucleus | 20.75 | 15.76 |
| KRH00328 | Soybean | nucleus | 27.21 | 15.18 |
| PGSC0003DMT400041065 | Potato | nucleus | 21.43 | 14.38 |
| CDY00719 | Canola | nucleus | 4.76 | 5.91 |
| CDY33814 | Canola | nucleus | 1.7 | 5.75 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078JBN6 | UniProt:A0A078JBN6 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY61527 | ProteinID:CDY61527 | ProteinID:CDY61527.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00033990001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF2 |
| SMART:SM00380 | SUPFAM:SSF54171 | TMHMM:TMhelix | UniParc:UPI0004EE306E | SEG:seg | : |
Description
BnaC04g53380DBnaC04g53380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBN6]
Coordinates
chrLK034008:-:8930..10089
Molecular Weight (calculated)
33708.3 Da
IEP (calculated)
5.365
GRAVY (calculated)
-0.824
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDKMVACT VSQNPKKEKF LVYCSCFYIG ASRFSFSAYL FCCFCVYTLE KEHNGPNQSS SASIEPSRRR RRAAEPVDTT LSRWVKEEEA EEGLKRTRRV
101: QAKGSRKSCM RGKGGPENPV CRFRGVRQRV WGKWVAEIRE PVNQRGGNSK RLWLGTFDTA SEAALAYDRA ASAMYGRYAR LNFPDGLGNG QDDEMKKTDE
201: AESSRSYWLE TYNVSETGNS VVDKKDGEDY LYEDCIELGQ EKIENLGRMA DNEIVKSEED YMFDGFELDK GLLYNEPGYY HGGGFDPYLE HFRF
101: QAKGSRKSCM RGKGGPENPV CRFRGVRQRV WGKWVAEIRE PVNQRGGNSK RLWLGTFDTA SEAALAYDRA ASAMYGRYAR LNFPDGLGNG QDDEMKKTDE
201: AESSRSYWLE TYNVSETGNS VVDKKDGEDY LYEDCIELGQ EKIENLGRMA DNEIVKSEED YMFDGFELDK GLLYNEPGYY HGGGFDPYLE HFRF
001: MEKEDNGSKQ SSSASVVSSR RRRRVVEPVE ATLQRWEEEG LARARRVQAK GSKKGCMRGK GGPENPVCRF RGVRQRVWGK WVAEIREPVS HRGANSSRSK
101: RLWLGTFATA AEAALAYDRA ASVMYGPYAR LNFPEDLGGG RKKDEEAESS GGYWLETNKA GNGVIETEGG KDYVVYNEDA IELGHDKTQN PMTDNEIVNP
201: AVKSEEGYSY DRFKLDNGLL YNEPQSSSYH QGGGFDSYFE YFRF
101: RLWLGTFATA AEAALAYDRA ASVMYGPYAR LNFPEDLGGG RKKDEEAESS GGYWLETNKA GNGVIETEGG KDYVVYNEDA IELGHDKTQN PMTDNEIVNP
201: AVKSEEGYSY DRFKLDNGLL YNEPQSSSYH QGGGFDSYFE YFRF
Arabidopsis Description
DREB2EDehydration-responsive element-binding protein 2E [Source:UniProtKB/Swiss-Prot;Acc:O80917]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.