Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G215600.1 | Wheat | nucleus | 98.41 | 98.41 |
| TraesCS2D01G221200.1 | Wheat | nucleus | 98.41 | 98.41 |
| HORVU2Hr1G044230.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 96.81 | 82.65 |
| Os07t0543000-01 | Rice | nucleus | 79.68 | 78.12 |
| EER99495 | Sorghum | nucleus | 78.09 | 77.17 |
| Zm00001d021701_P002 | Maize | nucleus | 76.49 | 76.19 |
| TraesCS7B01G208000.1 | Wheat | nucleus | 52.59 | 55.0 |
| TraesCS1B01G290500.1 | Wheat | cytosol | 42.23 | 43.8 |
| TraesCS6B01G060700.2 | Wheat | nucleus | 40.24 | 40.73 |
| TraesCS6B01G220300.1 | Wheat | nucleus | 22.71 | 19.13 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:TraesCS2B01G240600 |
| EnsemblPlants:TraesCS2B01G240600.1 | InterPro:bHLH_dom | TIGR:cd00083 | TIGR:cd14686 | SEG:seg | : |
Description
No Description!
Coordinates
chr2B:+:244874707..244880348
Molecular Weight (calculated)
27527.8 Da
IEP (calculated)
6.905
GRAVY (calculated)
-0.578
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPEGSNWV FDCPLMDDLA AADFAAAPAG GFYWTPPMQP QMHTLAQAVS ATPAPNPCAE INSSVSVCWD HAKGQPKNKR PRSETGAQPS SKACREKVRR
101: DKLNERFLEL SAVLDPGKTP KIDKCAILND AIRAVTELRS EAEKLKDSND SLQEKIRELK AEKNELRDEK QKLKAEKESL EQQIKFMNAR QSLVPHPSVI
201: PAAAFAAAQG QAAGHKLMMP VMSYPGFPMW QFMPPSDVDT SDDPKSCPPV A
101: DKLNERFLEL SAVLDPGKTP KIDKCAILND AIRAVTELRS EAEKLKDSND SLQEKIRELK AEKNELRDEK QKLKAEKESL EQQIKFMNAR QSLVPHPSVI
201: PAAAFAAAQG QAAGHKLMMP VMSYPGFPMW QFMPPSDVDT SDDPKSCPPV A
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVRIG SYIWRSCYGC VITQLVFRCS CCDRDIGLLH KSILCFFFCL RFAYVPLFPK EVDESRSLPI
101: AKGSVEVDGF LCDADVIKEP SSRKRIKTES CTGSNSKACR EKQRRDRLND KFTELSSVLE PGRTPKTDKV AIINDAIRMV NQARDEAQKL KDLNSSLQEK
201: IKELKDEKNE LRDEKQKLKV EKERIDQQLK AIKTQPQPQP CFLPNPQTLS QAQAPGSKLV PFTTYPGFAM WQFMPPAAVD TSQDHVLRPP VA
101: AKGSVEVDGF LCDADVIKEP SSRKRIKTES CTGSNSKACR EKQRRDRLND KFTELSSVLE PGRTPKTDKV AIINDAIRMV NQARDEAQKL KDLNSSLQEK
201: IKELKDEKNE LRDEKQKLKV EKERIDQQLK AIKTQPQPQP CFLPNPQTLS QAQAPGSKLV PFTTYPGFAM WQFMPPAAVD TSQDHVLRPP VA
Arabidopsis Description
bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.