Factsheet for Os08t0138500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G304500.1	Wheat	nucleus	80.63	85.0
TraesCS7B01G208000.1	Wheat	nucleus	80.24	84.58
TraesCS7A01G307700.1	Wheat	nucleus	79.84	84.17
KXG24376	Sorghum	nucleus	83.0	84.0
Zm00001d024679_P002	Maize	nucleus	82.21	80.93
HORVU7Hr1G073310.5	Barley	cytosol	75.1	76.92
Zm00001d027911_P001	Maize	mitochondrion	28.85	76.84
Zm00001d046173_P001	Maize	nucleus	46.25	70.06
Zm00001d049384_P001	Maize	cytosol	53.75	63.85
Zm00001d046571_P001	Maize	cytosol	53.75	63.85
GSMUA_Achr10P...	Banana	cytosol	32.02	63.28
GSMUA_Achr3P23080_001	Banana	nucleus	53.36	58.7
Os07t0543000-01	Rice	nucleus	54.15	53.52
GSMUA_Achr8P33180_001	Banana	nucleus	46.64	52.21
Os05t0455400-01	Rice	cytosol	28.85	49.32
GSMUA_Achr11P...	Banana	cytosol	34.39	47.54
Os02t0116600-01	Rice	cytosol	40.71	43.64
Os02t0433600-01	Rice	nucleus	25.3	18.66

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	EntrezGene:4344627	EMBL:AK102951	ProteinID:BAD03011.1
ProteinID:BAF22874.1	ProteinID:BAT03764.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
EMBL:HQ858852	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os08g0138500	EnsemblPlants:Os08t0138500-01	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF60	UniProt:Q6ZKI8	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0000225FA9	RefSeq:XP_015649810.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

basic helix-loop-helix protein 060Similar to Helix-loop-helix-like protein (Fragment). (Os08t0138500-01)

Coordinates

chr8:-:2148965..2151526

Molecular Weight (calculated)

27228.3 Da

IEP (calculated)

5.821

GRAVY (calculated)

-0.609

Length

253 amino acids

Sequence
(BLAST)

001: MSGTPADGGG GGGGGGGGSG DDWFLDCGIL EDLPAAACGA FPWDASPSCS NPSVEVSSYV NTTSYVLKEP GSNKRVRSGS CGRPTSKASR EKIRRDKMND
101: RFLELGTTLE PGKPVKSDKA AILSDATRMV IQLRAEAKQL KDTNESLEDK IKELKAEKDE LRDEKQKLKV EKETLEQQVK ILTATPAYMP HPTLMPAPYP
201: QAPLAPFHHA QGQAAGQKLM MPFVGYPGYP MWQFMPPSEV DTSKDSEACP PVA

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.