Factsheet for GSMUA_Achr3P16700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16260_001	Banana	endoplasmic reticulum	41.54	57.86
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.28	55.25
GSMUA_Achr11P...	Banana	nucleus	49.23	48.48
GSMUA_Achr11P...	Banana	nucleus	34.87	36.76
GSMUA_Achr11P...	Banana	cytosol	34.36	33.84
GSMUA_Achr9P20930_001	Banana	cytosol	30.77	32.26
GSMUA_Achr4P05180_001	Banana	cytosol	33.33	32.02
GSMUA_Achr9P02360_001	Banana	cytosol	36.41	29.83
GSMUA_Achr6P21590_001	Banana	nucleus	43.08	28.0
GSMUA_Achr6P14750_001	Banana	nucleus	42.05	27.15
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	34.87	26.77
GSMUA_Achr10P...	Banana	cytosol	27.69	25.96
GSMUA_AchrUn_...	Banana	nucleus	35.9	25.18
GSMUA_Achr11P...	Banana	nucleus	32.82	24.43
GSMUA_Achr1P07770_001	Banana	cytosol	27.69	22.31
GSMUA_Achr1P07740_001	Banana	nucleus	34.36	17.09
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	32.31	16.45
GSMUA_Achr6P17960_001	Banana	cytosol	17.44	15.89

Protein Annotations

EnsemblPlants:GSMUA_Achr3P16700_001	EnsemblPlants:GSMUA_Achr3T16700_001	EnsemblPlantsGene:GSMUA_Achr3G16700_001	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315
InterPro:Znf_B-box	PANTHER:PTHR31832	PFAM:PF00643	PFscan:PS50119	SEG:seg	SMART:SM00336
UniParc:UPI000295852D	UniProt:M0SF86	MapMan:15.5.1.1	:	:	:

Description

B-box zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G16700_001]

Coordinates

chr3:+:18004350..18005679

Molecular Weight (calculated)

20410.8 Da

IEP (calculated)

6.486

GRAVY (calculated)

-0.279

Length

195 amino acids

Sequence
(BLAST)

001: MKIQCDVCER AAAAVLCFAD EAALCRSCDE KVHAANKVAG KHRRVLLLPR GSSSPSPHPS STSADNIPAC DVCKEKAGFF FCLEDRALLC RQCDATTHAA
101: KPCGSSHQRF LITGVRVDDV IDSSSSSGGR CKANSSGGSG IQSPSGSLAS TPTAAVGERL PGDPMGHDGW SWSELLDGVE LERWYGIPDP GSSSS

Best Arabidopsis Sequence Match ( AT2G31380.1 )
(BLAST)

001: MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG

Arabidopsis Description

BBX25B-box zinc finger protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9SID1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.