Factsheet for VIT_04s0079g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98005	Soybean	cytosol	59.1	55.51
PGSC0003DMT400043094	Potato	nucleus	59.2	55.3
KRH30884	Soybean	cytosol	59.01	55.21
Solyc02g036390.1.1	Tomato	cytosol	42.59	54.52
AT1G65920.1	Thale cress	cytosol	49.95	49.9
CDY31624	Canola	cytosol	48.76	49.85
Bra038181.1-P	Field mustard	cytosol	49.45	49.6
CDX87989	Canola	cytosol	49.15	49.3
GSMUA_Achr1P02140_001	Banana	cytosol	43.38	48.82
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	8.66	46.77
GSMUA_Achr5P11650_001	Banana	cytosol	44.38	45.98
CDX87986	Canola	cytosol	8.56	41.75
TraesCS6A01G261000.1	Wheat	cytosol	37.91	41.73
Zm00001d017641_P004	Maize	cytosol	35.22	41.12
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	41.19	40.47
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	41.49	40.45
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	41.19	39.35
TraesCS6D01G241800.1	Wheat	cytosol	41.39	39.21
TraesCS6B01G288400.1	Wheat	cytosol	41.39	38.99
VIT_01s0026g02170.t01	Wine grape	cytosol	35.02	38.77
VIT_06s0009g03550.t01	Wine grape	nucleus	41.99	38.12
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	25.87	37.63
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	41.09	37.61
HORVU6Hr1G066460.5	Barley	cytosol	39.9	37.58
Os04t0583700-00	Rice	cytosol	38.61	37.52
Zm00001d051479_P005	Maize	nucleus	39.4	36.8
KXG26989	Sorghum	cytosol	39.01	36.74
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	38.81	36.35
HORVU2Hr1G104550.10	Barley	cytosol, nucleus, plastid	41.19	35.84
VIT_18s0166g00210.t01	Wine grape	cytosol	39.8	35.43
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	39.1	35.41
VIT_05s0049g01140.t01	Wine grape	cytosol	37.31	35.34
Solyc02g081250.1.1	Tomato	cytosol	59.9	28.85
VIT_07s0031g02560.t01	Wine grape	cytosol	11.14	25.17
VIT_07s0031g02850.t01	Wine grape	mitochondrion	10.25	24.52
VIT_01s0026g01520.t01	Wine grape	cytosol	9.35	23.74
VIT_14s0083g01020.t01	Wine grape	cytosol	10.85	22.8
VIT_14s0006g03240.t01	Wine grape	cytosol	8.46	21.52
VIT_19s0014g03080.t01	Wine grape	cytosol	10.25	20.93
VIT_01s0137g00230.t01	Wine grape	cytosol	10.85	20.41
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	6.57	20.06

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	InterPro:Brevis_radix_dom
ProteinID:CCB51111	ProteinID:CCB51111.1	ncoils:Coil	UniProt:F6HFV9	EMBL:FN595753	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993
InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13540	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF177	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002108A78
ArrayExpress:VIT_04s0079g00290	EnsemblPlantsGene:VIT_04s0079g00290	EnsemblPlants:VIT_04s0079g00290.t01	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:10683930..10694055

Molecular Weight (calculated)

112269.0 Da

IEP (calculated)

8.386

GRAVY (calculated)

-0.502

Length

1005 amino acids

Sequence
(BLAST)

0001: MGEESLATVP FDRAVEQAIV TLKKGAYLLR CGRRGKPKFC PFRLSTDEKF LIWYSGQEEK QLRLSSITKI IPGQRTVNFQ RQLQEERECR SFSLVYANGE
0101: RSLDLICKDK AQADSWFLGL KAVISRCQHP RQLSTFRNCV GVQTCFNSPA GYFRRKHNLG LLEDTPKFSQ VRSLCGSPTQ SLSERCFSDG LSYSADSFYS
0201: SESSVSNVKN VVDVSLPSSP YVEPDHLKQG EEIYAGTEIQ TDMLSQVAAP SHASPQMEKN DILRDVMIWG EGIEGGILGG GVYRFGNQNG MQSDALLPKL
0301: LESTTMLDVR EISLGGKHAA LVTKHGEVFC WGEGSGGRLG HKVNMDMGNP KIVESLTGVL VKSVSCGEYQ TCALTHSGEL YTWGDNGSGI DLVGERRKRS
0401: QWIPSRLSGP LNGTSISNVA CGEWHMAIVS TSGQLFTYGD GTFGVLGHGK LESISQPKEV ESLSGLWVKA AACGPWHTAA IVEVRADRLK FNTKGGKLFT
0501: WGDGDKGRLG HGDQERKLLP TCVAQLVDHD FVQVSCGRML TVGLTCLGTV YTMGRLGDTE DRNSPAVVEE LRYRQVESIA CGSGFTAAIC LHKSISSTDQ
0601: SACSGCRMAF GFTRKKHNCY NCGLLFCRAC SNKKVLNASL APNKKKPFRV CDPCYTYLQR IKHSSRLLKL ENHSPRQLLM TQKTSFDEKE DRGEGTPART
0701: QFSSVGQPCN EASQSYEKKP FKNQVENQQT VEPVSSLSNG LPRWGQVPCP FLFEKYCREN SIALKDFPDT DKILIEEVER LRSEARSLEK LCQMRSEKIQ
0801: ECQQKLQETW SLAREEAAKC KAAKEVIKAL SSRLHTMSEK LSSERDAKDG IDSKLPQIIT RYVDTPKERQ LDSLCGSPIV FSNSLRSMYG RDECQGHTRS
0901: VEDSCLEKID PRQNGTKPSK LEWVEQYEPG VYITFITLAS GQRGLKRVRF SRKRFTEKEA ERWWEENQIG VYQNYGIEGY ISSSQNKMKE STWLCSSIKS
1001: RAQYI

Best Arabidopsis Sequence Match ( AT1G65920.1 )
(BLAST)

0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI

Arabidopsis Description

F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.