Factsheet for VIT_01s0026g02170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	18.06	88.17
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	45.48	59.77
KRH45886	Soybean	nucleus	61.89	59.03
KRG99112	Soybean	cytosol	59.36	55.0
VIT_06s0009g03550.t01	Wine grape	nucleus	65.42	53.66
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	63.88	52.82
PGSC0003DMT400059356	Potato	cytosol	59.47	52.38
GSMUA_Achr4P00510_001	Banana	cytosol	55.07	52.03
AT1G69710.1	Thale cress	cytosol	54.3	47.36
TraesCS7A01G185400.1	Wheat	cytosol	52.42	47.04
CDY28580	Canola	plasma membrane	53.52	46.55
CDY44086	Canola	plasma membrane, vacuole	53.85	46.48
TraesCS7B01G090600.1	Wheat	cytosol	52.2	46.47
TraesCS7D01G187100.3	Wheat	cytosol	51.76	46.03
HORVU7Hr1G038070.12	Barley	cytosol	46.15	44.43
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	54.19	42.49
VIT_18s0166g00210.t01	Wine grape	cytosol	50.99	41.01
VIT_05s0049g01140.t01	Wine grape	cytosol	47.03	40.25
GSMUA_Achr7P20980_001	Banana	cytosol	56.39	35.24
VIT_04s0079g00290.t01	Wine grape	cytosol	38.77	35.02
VIT_07s0031g02560.t01	Wine grape	cytosol	16.52	33.71
VIT_01s0026g01520.t01	Wine grape	cytosol	14.1	32.32
VIT_07s0031g02850.t01	Wine grape	mitochondrion	14.21	30.71
VIT_14s0006g03240.t01	Wine grape	cytosol	12.11	27.85
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	9.69	26.75
VIT_19s0014g03080.t01	Wine grape	cytosol	14.21	26.22
VIT_01s0137g00230.t01	Wine grape	cytosol	15.2	25.84
VIT_14s0083g01020.t01	Wine grape	cytosol	12.78	24.27

Protein Annotations

EntrezGene:100250008	wikigene:100250008	Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1
ProteinID:CCB56560	ProteinID:CCB56560.1	UniProt:F6HPD2	EMBL:FN596002	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR017455
EntrezGene:LOC100250008	wikigene:LOC100250008	PFAM:PF00415	PFAM:PF01363	InterPro:PH-like_dom_sf	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PANTHER:PTHR22870	PANTHER:PTHR22870:SF325	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002108B27
ArrayExpress:VIT_01s0026g02170	EnsemblPlantsGene:VIT_01s0026g02170	EnsemblPlants:VIT_01s0026g02170.t01	unigene:Vvi.8378	RefSeq:XP_002273996	RefSeq:XP_002273996.2
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:11576724..11584830

Molecular Weight (calculated)

97905.4 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.330

Length

908 amino acids

Sequence
(BLAST)

001: MADPQRNGLA ERDVEQAIVA LKKGAYLLKY GRRGKPKFCP FRLSNDESML IWYSGKEEKQ LKLNNVSRII PGQRTPIFQR YPRPEKEYQS FSLIYGDRSL
101: DLICKDKDEA EVWFIGLKGL ISRGNYRKWR SEIRDDSISS ESPHSRARRI SPSLSSSDPG DTQQTQVTFE NIPQSGLGKA FSDVISYTAS TKSFTQAESV
201: ASSLSSLSSG GVDNSNGRTS ASENFRVSLS SAVSSSSQGS GHDDFDALGD VFMWGEGIGD GIMGAGVHRV GSSSSTKIDA LLPKALESTV VLDVHSIACG
301: GKHAVLVTKK GEVFSWGEEC GSRLGHGVEV DVSHPKLIDA LCGMNIELVA CGEYHSCAVT LSGDLYTWGD GTHNSGLLGH GSEASHWIPK KVSGPMEGMH
401: VSYVACGPWH TAVVTSAGQL FTFGDGTFGA LGHGDHSSMS IPREVEALRG QRTMRVACGV WHTAAVVELM IASSSFESSG SSSSGKLFTW GDGDKGRLGH
501: GDKEPRLVPQ SVTALINESF CQVACGHNLS VALTTSGRVY TMGSAVYGQL GSPVADGKIP TLVEGKIANS FVEEVACGSY HVAVLTSKTE VYTWGKGTNG
601: QLGHGDNDHR NTPTLVDFLK DKQVKNVVCG LNFTAAISLH KWVSCADHSI CSGCHNQFGF RRKRHNCYNC GLVFCNTCSS RKSLKASLAP NMNKPYRVCD
701: DCFTKLKKAM ESGSVLRIPK ARSSNILQKS NEIAERDTMG PRVQGQLSRL SSVDSFSRAE SKHYKCDTKL EFNDARVSPH LNGNVQRGSF HSSKLSNSLF
801: GGSRKIFSAS RPGSRIVSRA TSPVSGKSSP PQSAMLAASL AVVRSPEATD DDPKHTNDSL SREIINLRAQ VHRYPCVSPT YIVGPTSSSS IGAHTRECVS
901: FVFISSSF

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.