Factsheet for Solyc04g071040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002081	Potato	cytosol	99.11	99.11
KRH08750	Soybean	cytosol	45.83	81.0
VIT_18s0166g00210.t01	Wine grape	cytosol	80.37	80.16
KRH35179	Soybean	cytosol	77.98	78.39
KRG91629	Soybean	cytosol	76.2	78.14
KRH70333	Soybean	cytosol	75.75	76.16
CDY70949	Canola	cytosol	23.53	74.86
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	69.54	72.63
AT1G76950.1	Thale cress	cytosol	70.6	72.08
KRH08736	Soybean	endoplasmic reticulum	44.41	71.74
KRH30228	Soybean	cytosol	25.75	71.25
Bra003698.1-P	Field mustard	mitochondrion	67.85	70.94
CDY11586	Canola	cytosol	65.81	70.37
CDY48550	Canola	cytosol	61.1	70.2
CDY47138	Canola	cytosol	65.28	70.2
Bra016214.1-P	Field mustard	cytosol	65.36	70.1
CDX88324	Canola	cytosol	65.99	70.03
CDX87557	Canola	cytosol	66.52	69.8
Bra015708.1-P	Field mustard	cytosol	66.52	69.74
CDX68076	Canola	cytosol	50.98	69.16
Os01t0964800-01	Rice	mitochondrion	34.9	67.88
KRH30227	Soybean	cytosol	26.82	66.96
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	58.61	66.87
KXG34192	Sorghum	cytosol	52.75	65.13
Zm00001d011805_P001	Maize	cytosol	52.49	64.8
HORVU3Hr1G112690.2	Barley	cytosol, plastid	51.6	63.99
TraesCS3A01G512900.1	Wheat	cytosol	51.42	63.56
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	51.15	63.51
GSMUA_Achr8P07850_001	Banana	cytosol	62.26	63.44
Zm00001d006773_P001	Maize	cytosol	22.65	63.28
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.89	63.18
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.98	63.15
TraesCS3D01G522600.2	Wheat	cytosol	48.67	63.06
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	50.71	62.95
TraesCS3B01G581600.2	Wheat	cytosol	50.98	62.94
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	54.71	62.92
EES18851	Sorghum	cytosol, plastid	51.15	62.88
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.98	62.6
Os05t0106700-00	Rice	mitochondrion	51.24	61.38
GSMUA_AchrUn_...	Banana	nucleus	60.48	59.06
EES13137	Sorghum	cytosol	55.77	59.02
Os04t0686200-01	Rice	plasma membrane	55.15	58.75
TraesCS2D01G589800.1	Wheat	cytosol	54.71	57.57
TraesCS2B01G609200.1	Wheat	cytosol	54.44	57.29
TraesCS2A01G581400.1	Wheat	cytosol	54.44	57.29
Zm00001d002876_P001	Maize	mitochondrion	55.15	57.13
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	54.44	56.97
HORVU3Hr1G108180.1	Barley	mitochondrion	8.35	56.29
Solyc03g005590.1.1	Tomato	cytosol, plastid	50.0	52.57
Solyc05g007280.2.1	Tomato	cytosol	2.75	52.54
Solyc11g065120.1.1	Tomato	cytosol	51.69	51.55
Solyc12g099740.1.1	Tomato	nucleus	45.83	50.34
Solyc03g116360.1.1	Tomato	cytosol	36.77	43.76
Solyc05g007290.1.1	Tomato	endoplasmic reticulum	38.1	42.52
Solyc02g036390.1.1	Tomato	cytosol	27.62	39.62
Solyc05g018620.2.1	Tomato	cytosol	9.5	34.85
Solyc07g042980.2.1	Tomato	cytosol	6.93	32.1
Solyc05g056590.2.1	Tomato	cytosol	7.1	29.09
Solyc02g085780.2.1	Tomato	cytosol	9.86	28.46
Solyc07g063300.2.1	Tomato	plasma membrane	11.46	26.54
Solyc05g006940.2.1	Tomato	cytosol	9.24	26.4
Solyc07g042970.2.1	Tomato	mitochondrion	5.6	26.14
Solyc05g014030.2.1	Tomato	cytosol	11.81	24.95
Solyc02g089220.2.1	Tomato	mitochondrion	7.02	23.94
Solyc02g081250.1.1	Tomato	cytosol	34.46	18.59

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	InterPro:Brevis_radix_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849
InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	UniProt:K4BT96
PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf
InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729
SUPFAM:SSF50985	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc04g071040.2	EnsemblPlants:Solyc04g071040.2.1	UniParc:UPI0002766653	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:57911782..57921533

Molecular Weight (calculated)

122326.0 Da

IEP (calculated)

8.346

GRAVY (calculated)

-0.450

Length

1126 amino acids

Sequence
(BLAST)

0001: MADLVSYGDA DRDIEQALIA LKKGAQLLKY GRKGKPKFYP FRLSNDELSL VWISSSGEKS LKLASVSRII PGQRTAVFRR YLRPDKDYLS FSLIYNYGKR
0101: SLDLICKDKV EAEFWITGLK ALISSGQGGR SKVDGWSDGG LYFDDSRDLT SNSPSSSSVS ATKEISSPDA SLSSNPNTSP KSYQPYNFVQ SERSHVALDQ
0201: ANMHNIQAKG SAPDVFRVSV SSAPSTSSHG SAPDDCDALG DVYIWGEVIC DSIVKVGPEK NSSTVSTRAD VLVPRPLESN VVLDVHHIAC GVKHAALVTR
0301: QGEIFTWGEE SGGRLGHGVG KDVTQPRFVE SLSLCNIDFV ACGEFHTCAV TMAGELYTWG DGTHNAGLLG NGTDVSHWIP KRISGPLEGL QVASVTCGPW
0401: HTALITSTGQ LFTFGDGTFG VLGHGDRENV LFPREVKSLS GLRTIAAACG VWHTAAVVEV IVTQSSASVS SGKLFTWGDG DKNRLGHGDK EPRLEPTCVP
0501: ALIDYNFHKI ACGHSLTVCL TTSGHVFTMG STVYGQLGNP FSDGKLPCLV EDKLLGEIVE DIACGSYHVA VLTSKNEVYT WGKGANGRLG HGDVEDRKAP
0601: TLVEALKDRH VKYISCGSNY TAAICLHKWV SGAEQSQCSA CRQAFGFTRK RHNCYNCGLV HCHACTSRKA IRAALAPNPN KPYRVCDSCF TKLSKVAEIG
0701: INNRRSAGPR LSGENKDRLD KADIRSAKSG MPPNLDLIKQ LDSKAVKQGK KADTFSLGRS SQAPLLQLKD VVSTTGDLRW AVPKPVMIQS GVSSRSVSPF
0801: SRKPSPPRSA TPVPTTAGLS FSKSIADSLK KTNELLNQEV HKLRAQVENL RHRCELQESE LQKSTKKAQE AMALAAEESA KSKAAKEAMK SLMAQLKDMA
0901: ERLPPGAYDV ESLKLAYLPN GLDSNGIHYP NANGERHSRS DSVTSSYMAS QTSMDFSTYG MHSPTRYQRD SGSIEAISNN QILTSNGTDD RGEVRLPNGS
1001: EAQVNINSAS QAVDNEDAES LQDNGNGLKS RNSLPSGNPN QIEAEWIEQY EPGVYITLMA LRDGTRDLKR VRFSRRRFGE HQAETWWSEN RDKVYERYNV
1101: RGSDKSSVTG QAARRSEGGL SPSSQI

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.