Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13137 | Sorghum | cytosol | 89.33 | 91.26 |
| Os04t0686200-01 | Rice | plasma membrane | 77.46 | 79.66 |
| HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 77.0 | 77.79 |
| TraesCS2A01G581400.1 | Wheat | cytosol | 76.54 | 77.76 |
| TraesCS2B01G609200.1 | Wheat | cytosol | 76.26 | 77.48 |
| TraesCS2D01G589800.1 | Wheat | cytosol | 76.17 | 77.38 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 10.76 | 70.06 |
| KRH08750 | Soybean | cytosol | 35.88 | 61.22 |
| CDY70949 | Canola | cytosol | 18.77 | 57.63 |
| KRG91629 | Soybean | cytosol | 56.95 | 56.38 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 58.33 | 56.16 |
| KRH35179 | Soybean | cytosol | 57.13 | 55.45 |
| PGSC0003DMT400002081 | Potato | cytosol | 57.31 | 55.33 |
| Solyc04g071040.2.1 | Tomato | cytosol | 57.13 | 55.15 |
| KRH30228 | Soybean | cytosol | 20.61 | 55.04 |
| CDY47138 | Canola | cytosol | 52.99 | 55.01 |
| CDY11586 | Canola | cytosol | 53.27 | 54.99 |
| Bra016214.1-P | Field mustard | cytosol | 53.08 | 54.95 |
| GSMUA_Achr8P07850_001 | Banana | cytosol | 55.84 | 54.93 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 54.28 | 54.73 |
| KRH70333 | Soybean | cytosol | 56.12 | 54.46 |
| CDX88324 | Canola | cytosol | 52.81 | 54.1 |
| Bra003698.1-P | Field mustard | mitochondrion | 53.27 | 53.76 |
| Zm00001d011805_P001 | Maize | cytosol | 45.08 | 53.73 |
| Bra015708.1-P | Field mustard | cytosol | 53.08 | 53.72 |
| CDX87557 | Canola | cytosol | 52.9 | 53.59 |
| AT1G76950.1 | Thale cress | cytosol | 54.28 | 53.49 |
| CDY48550 | Canola | cytosol | 47.75 | 52.96 |
| Zm00001d035723_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 44.34 | 52.56 |
| KRH08736 | Soybean | endoplasmic reticulum | 33.58 | 52.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.29 | 52.12 |
| CDX68076 | Canola | cytosol | 38.36 | 50.24 |
| Zm00001d006773_P001 | Maize | cytosol | 17.85 | 48.14 |
| Zm00001d038882_P002 | Maize | cytosol | 44.25 | 45.59 |
| Zm00001d042074_P001 | Maize | cytosol | 45.08 | 44.91 |
| KRH30227 | Soybean | cytosol | 18.49 | 44.57 |
| Zm00001d011660_P003 | Maize | cytosol | 43.05 | 44.28 |
| Zm00001d011851_P001 | Maize | cytosol | 44.53 | 43.29 |
| Zm00001d017641_P004 | Maize | cytosol | 28.79 | 36.35 |
| Zm00001d003632_P003 | Maize | extracellular | 13.43 | 32.96 |
| Zm00001d002544_P004 | Maize | cytosol, endoplasmic reticulum, nucleus | 32.75 | 32.07 |
| Zm00001d051479_P005 | Maize | nucleus | 31.65 | 31.97 |
| Zm00001d021372_P001 | Maize | mitochondrion | 11.68 | 29.4 |
| Zm00001d019595_P001 | Maize | cytosol | 12.24 | 27.54 |
| Zm00001d005395_P001 | Maize | cytosol | 12.05 | 27.12 |
| Zm00001d050380_P004 | Maize | cytosol | 9.38 | 26.22 |
| Zm00001d032229_P002 | Maize | mitochondrion | 10.03 | 26.01 |
| Zm00001d043280_P001 | Maize | cytosol | 9.75 | 25.98 |
| Zm00001d033172_P001 | Maize | cytosol | 11.41 | 25.83 |
| Zm00001d050985_P002 | Maize | cytosol | 11.68 | 22.84 |
| Zm00001d052624_P007 | Maize | plastid | 9.57 | 22.71 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1D6E4Z3 | InterPro:BRX_N |
| InterPro:Brevis_radix_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 |
| InterPro:IPR001849 | InterPro:IPR009091 | InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 |
| ProteinID:ONM15567.1 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 | PFAM:PF16457 |
| InterPro:PH-like_dom_sf | InterPro:PH_domain | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 |
| PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF194 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 |
| SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI000842E79F | EnsemblPlantsGene:Zm00001d002876 | EnsemblPlants:Zm00001d002876_P001 |
| EnsemblPlants:Zm00001d002876_T001 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Coordinates
chr2:-:25317220..25323118
Molecular Weight (calculated)
118912.0 Da
IEP (calculated)
8.557
GRAVY (calculated)
-0.484
Length
1087 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPGTARRTAQ PRVRWSPSNP RLERPACRLP RLVGECVSPE ALVALKKGTQ LLKYGRKGKP KFIPFRLSND ESTLVWVSNN KDKSLKLASV SRILSGQRTL
0101: VFQRFLLPEK DHLSFSLIYN DGKRSLDLIC KNKVEAEAWF TGLSALICRG QHGSQVQHID GIRIAGLPFD GARESSLSGS STFTSDSFEN KLSSVNSSKD
0201: RSSGEYTYSE RTDVSDMQVK SVSSSDIRIS VSSALSTSSH GSGGEDSESF GDIYVWGEVI CDTISRSGSD RSAYSPGTTT DVLVPKPLES NVMLDVSYVA
0301: CGVKHAALVT RQAEVFTWGE ECSGRLGHGI GTNVFQPRLV ESLSTCNVEL IACGEFHTCA VTATGDLYTW GDGTHNAGLL GHGSNVSHWI PKRVSGPLDG
0401: LPVSAVSCGT WHTALITSSG QLYTFGDGTF GVLGHGNRAS CSYPKEVESL KGLRTISVSC GVWHTAAVVE VIISQSNASS GKLFTWGDGD KYRLGHGDRS
0501: SKLKPTCVPS LIDYNFHKAA CGHTLTIGLT TSGHIFTVGS PVYGQLGNPN NDGRYPRLVE EQLGGGGVVE VACGSYHVAV LTNAGEVYTW GKGTNGRLGH
0601: GDIADRKVPT LVEALKDRSV KRVACGSSFT AAICQHKWVS GMEQSQCSAC RQPFGFTRKR HNCYNCGLVH CHSCSSKKAL RAALSPNPGK PYRVCDSCYV
0701: KLSKVLDSGV SYSRNTIPRL PGDTKAERID TKATRVAQSN SSDMIRNLDV KAAKQTKKSE YSSQVPATLQ LKDIPFISAP DLQNLSTVAN QYPYDPRSTL
0801: PSLRMPYLNY SSSMSSESSE SLKDANELLK QEVQKLQAEV NSLRQEREQQ DAELQKADAK AREAMNLATE EASKLKTAKD VINSLTAQLK EMSERLPPGA
0901: CDVKNNGRVM GDLAPEMGRE KQMRYGDRFS GLPAQVYQTS NYSETAMVPP QGSSRSEHVD GVREFFSPVQ QMANGGGSTT IGYRYRSDDH DRRETDRFQI
1001: NLQSLNTRSS NSPSNQVDAE WIEQYEPGVY LTLVSLRDGT KELKRVRFSR RRFGEHQAES WWKDNCEKVY DKYNVCGTDR LSSVTTA
0101: VFQRFLLPEK DHLSFSLIYN DGKRSLDLIC KNKVEAEAWF TGLSALICRG QHGSQVQHID GIRIAGLPFD GARESSLSGS STFTSDSFEN KLSSVNSSKD
0201: RSSGEYTYSE RTDVSDMQVK SVSSSDIRIS VSSALSTSSH GSGGEDSESF GDIYVWGEVI CDTISRSGSD RSAYSPGTTT DVLVPKPLES NVMLDVSYVA
0301: CGVKHAALVT RQAEVFTWGE ECSGRLGHGI GTNVFQPRLV ESLSTCNVEL IACGEFHTCA VTATGDLYTW GDGTHNAGLL GHGSNVSHWI PKRVSGPLDG
0401: LPVSAVSCGT WHTALITSSG QLYTFGDGTF GVLGHGNRAS CSYPKEVESL KGLRTISVSC GVWHTAAVVE VIISQSNASS GKLFTWGDGD KYRLGHGDRS
0501: SKLKPTCVPS LIDYNFHKAA CGHTLTIGLT TSGHIFTVGS PVYGQLGNPN NDGRYPRLVE EQLGGGGVVE VACGSYHVAV LTNAGEVYTW GKGTNGRLGH
0601: GDIADRKVPT LVEALKDRSV KRVACGSSFT AAICQHKWVS GMEQSQCSAC RQPFGFTRKR HNCYNCGLVH CHSCSSKKAL RAALSPNPGK PYRVCDSCYV
0701: KLSKVLDSGV SYSRNTIPRL PGDTKAERID TKATRVAQSN SSDMIRNLDV KAAKQTKKSE YSSQVPATLQ LKDIPFISAP DLQNLSTVAN QYPYDPRSTL
0801: PSLRMPYLNY SSSMSSESSE SLKDANELLK QEVQKLQAEV NSLRQEREQQ DAELQKADAK AREAMNLATE EASKLKTAKD VINSLTAQLK EMSERLPPGA
0901: CDVKNNGRVM GDLAPEMGRE KQMRYGDRFS GLPAQVYQTS NYSETAMVPP QGSSRSEHVD GVREFFSPVQ QMANGGGSTT IGYRYRSDDH DRRETDRFQI
1001: NLQSLNTRSS NSPSNQVDAE WIEQYEPGVY LTLVSLRDGT KELKRVRFSR RRFGEHQAES WWKDNCEKVY DKYNVCGTDR LSSVTTA
0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.