Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12764 | Canola | cytosol | 77.03 | 81.3 |
| CDY49416 | Canola | cytosol | 76.4 | 75.51 |
| AT3G23270.2 | Thale cress | cytosol | 69.35 | 72.77 |
| VIT_05s0049g01140.t01 | Wine grape | cytosol | 60.49 | 63.05 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 57.14 | 59.01 |
| PGSC0003DMT400034994 | Potato | cytosol | 54.88 | 58.65 |
| KRH00393 | Soybean | cytosol | 53.89 | 55.75 |
| KRH69117 | Soybean | cytosol | 53.98 | 55.38 |
| KRH31700 | Soybean | cytosol | 53.35 | 54.73 |
| KRH40796 | Soybean | cytosol | 35.8 | 52.8 |
| TraesCS1A01G366800.1 | Wheat | cytosol | 49.55 | 52.49 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 49.55 | 52.14 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 49.37 | 52.05 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 49.55 | 52.04 |
| Os01t0700200-01 | Rice | cytosol | 49.1 | 52.01 |
| EES19890 | Sorghum | cytosol | 47.92 | 51.96 |
| Os05t0545200-00 | Rice | cytosol | 47.38 | 51.68 |
| Zm00001d038882_P002 | Maize | cytosol | 48.37 | 50.71 |
| Zm00001d011660_P003 | Maize | cytosol | 48.28 | 50.52 |
| EES01332 | Sorghum | cytosol | 48.1 | 50.38 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 47.38 | 48.61 |
| AT1G76950.1 | Thale cress | cytosol | 46.93 | 47.05 |
| KRH65503 | Soybean | cytosol, mitochondrion, nucleus | 40.33 | 42.64 |
| AT5G12350.1 | Thale cress | nucleus | 40.69 | 41.86 |
| AT5G19420.2 | Thale cress | mitochondrion | 41.32 | 40.12 |
| AT1G69710.1 | Thale cress | cytosol | 36.08 | 38.33 |
| AT3G47660.4 | Thale cress | cytosol | 30.83 | 34.44 |
| AT1G65920.1 | Thale cress | cytosol | 30.29 | 33.3 |
| AT1G27060.1 | Thale cress | cytosol | 11.3 | 32.38 |
| AT5G63860.1 | Thale cress | cytosol | 12.75 | 32.05 |
| AT5G16040.1 | Thale cress | cytosol | 10.13 | 28.28 |
| AT5G08710.1 | Thale cress | mitochondrion | 11.03 | 28.11 |
| AT3G02510.1 | Thale cress | cytosol | 9.95 | 27.99 |
| AT3G15430.2 | Thale cress | cytosol | 11.21 | 25.41 |
| AT5G60870.2 | Thale cress | mitochondrion | 10.04 | 24.56 |
| AT3G26100.5 | Thale cress | cytosol, plastid | 11.66 | 24.25 |
| AT3G02300.2 | Thale cress | cytosol | 10.49 | 24.07 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:7922506 | ProteinID:AEE83430.1 |
| ArrayExpress:AT4G14368 | EnsemblPlantsGene:AT4G14368 | RefSeq:AT4G14368 | TAIR:AT4G14368 | RefSeq:AT4G14368-TAIR-G | EnsemblPlants:AT4G14368.1 |
| TAIR:AT4G14368.1 | Unigene:At.74643 | InterPro:BRX_N | InterPro:Brevis_radix_dom | ncoils:Coil | UniProt:F4JVE8 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0043531 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR001849 | InterPro:IPR009091 |
| InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | RefSeq:NP_001154232.2 | PFAM:PF00415 |
| PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 | PFAM:PF16457 | InterPro:PH-like_dom_sf | InterPro:PH_domain |
| PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 |
| PANTHER:PTHR22870:SF87 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 |
| SUPFAM:SSF57903 | UniParc:UPI0001E92FC9 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
Coordinates
chr4:-:8274168..8278810
Molecular Weight (calculated)
121380.0 Da
IEP (calculated)
9.514
GRAVY (calculated)
-0.419
Length
1106 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSFFVANG
1001: DLMSIKQKNG GIAKKIGCLR GIVIMLHHRV QRLLIQFQHQ LNLNHQLLIQ FLHQLNLNHQ LLIQFLHQLN LNHQLLLHNR ILIKQRIQKK FLMKASHHVY
1101: NSSLAK
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSFFVANG
1001: DLMSIKQKNG GIAKKIGCLR GIVIMLHHRV QRLLIQFQHQ LNLNHQLLIQ FLHQLNLNHQ LLIQFLHQLN LNHQLLLHNR ILIKQRIQKK FLMKASHHVY
1101: NSSLAK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.