Factsheet for Zm00001d039437_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02283	Sorghum	nucleus	87.47	89.2
Os01t0202500-01	Rice	cytosol, nucleus	64.62	65.54
TraesCS3A01G139300.1	Wheat	nucleus	61.56	63.32
TraesCS3D01G139600.1	Wheat	nucleus	61.0	62.75
TraesCS3B01G156900.1	Wheat	nucleus	60.72	62.46
HORVU3Hr1G026500.4	Barley	nucleus	59.05	60.74
Zm00001d037735_P001	Maize	cytosol	49.03	54.66
Zm00001d017412_P001	Maize	nucleus	18.66	47.18
Zm00001d036214_P001	Maize	nucleus	40.39	37.56
Zm00001d051018_P002	Maize	extracellular	25.35	35.97
Zm00001d045323_P004	Maize	nucleus	41.5	35.31
Zm00001d025957_P001	Maize	nucleus	22.28	31.25
Zm00001d002806_P001	Maize	nucleus	22.01	30.62
Zm00001d021278_P001	Maize	cytosol	17.55	30.58
Zm00001d051309_P001	Maize	nucleus	23.4	30.32
Zm00001d010093_P001	Maize	nucleus	16.71	30.15
Zm00001d036418_P001	Maize	nucleus	20.33	27.14
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	22.84	23.1
Zm00001d006198_P001	Maize	cytosol	14.48	20.47

Protein Annotations

EnsemblPlants:Zm00001d039437_P001	EnsemblPlants:Zm00001d039437_T001	EnsemblPlantsGene:Zm00001d039437	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315
InterPro:Znf_B-box	PANTHER:PTHR31832	PANTHER:PTHR31832:SF13	PFAM:PF00643	PFscan:PS50119	ProteinID:ONM28853.1
SEG:seg	SMART:SM00336	UniParc:UPI0001B37844	UniProt:A0A1D6MHD6	MapMan:15.5.1.1	:

Description

double B-box zinc finger protein3B-box zinc finger protein 22

Coordinates

chr3:+:4316527..4318099

Molecular Weight (calculated)

37748.9 Da

IEP (calculated)

5.693

GRAVY (calculated)

-0.248

Length

359 amino acids

Sequence
(BLAST)

001: MKVLCSACEA AEARLLCCAD EAALCARCDR DVHAANRLAG KHHRLPLLPP DDVSAPNCDI CQEAHAYFFC VEDRALLCRA CDMAVHTANA FVSAHRRFLL
101: TGVQVGLQPA AAAQDADPHP PAAAEPLQTP PPPDRKAAAA GDGSSPALLY SDDDIDWAAG ADAGGGVSVA VTLPDWSLVH EQFGAPPVVP RHADPALART
201: PSSKRSPRRS VAAAFTVQGG GGLAGGLPDW PLDEFFGFSE YSAGLAFAEN DTSKRSVFHW QADSGKLGST DGSPAGRPSS DASQDFFGQV PEFHQWSVPE
301: LPSPPTASGL HWQGGPRHGA ATTTDVAAVF VPDISSPENP FWCYATAAGQ APTKRRRRC

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.