Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G201500.1 | Wheat | nucleus | 39.77 | 34.58 |
| TraesCS7B01G105400.1 | Wheat | nucleus | 39.77 | 31.28 |
| Os04t0672200-01 | Rice | extracellular | 37.29 | 29.82 |
| Os10t0577800-01 | Rice | nucleus | 15.12 | 19.63 |
| Os03t0230300-01 | Rice | nucleus | 11.73 | 19.44 |
| Os03t0854800-03 | Rice | nucleus | 13.43 | 17.64 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | EntrezGene:4340647 | ProteinID:BAD45712.1 | ProteinID:BAF19202.1 | ProteinID:BAS97043.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 | GO:GO:0016740 | GO:GO:0016757 | InterPro:IPR004170 |
| InterPro:IPR012317 | EnsemblPlantsGene:Os06g0248400 | EnsemblPlants:Os06t0248400-01 | PFAM:PF00644 | PFAM:PF02825 | PFscan:PS51059 |
| PANTHER:PTHR32263 | PANTHER:PTHR32263:SF9 | InterPro:Poly(ADP-ribose)pol_cat_dom | UniProt:Q654Q5 | SUPFAM:SSF56399 | UniParc:UPI000043A3A7 |
| InterPro:WWE-dom | RefSeq:XP_015643732.1 | RefSeq:XP_015643733.1 | SEG:seg | : | : |
Description
Poly(ADP-ribose) polymerase, catalytic region domain containing protein. (Os06t0248400-01)
Coordinates
chr6:+:7698453..7703774
Molecular Weight (calculated)
84019.2 Da
IEP (calculated)
7.585
GRAVY (calculated)
-0.281
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLQKSHDL CLKRKLVDDC LSKDFKYRRV EEDNVSSNVE SRPLPGSPSQ SCCIQPNLAK DCVNYLKSGL PSRIAFYKQG AWCDFPQKIM ESLVEGFKAD
101: KSSAVVVMDD QPLLVDFLSM TMVNLKTRKQ RSVSWLDGTG KWFFPSAFFD EGVDESRKLN MGSEGSGQGL TEGMVPKAPN ELVKQAVVET SSPVLQNSCI
201: PDILRKKIVP VERGSESFQF VQNLFLSGMG SFASPKNLLH IHRYSAEDVT AQCRLESFAR QMRLTRKKIG YADVRYGWLG SRKQDIVGVL INGFISTGQT
301: SHSSDMRTGV YLSPENRAFT SVGLCDVDEK GVQYMLLCRA ILGNMGTIKP GSQDEFLSIY DSGVDNCSNP SYYVIWPSKL GTHISLEYLI SFRLTPEIQD
401: YLLHLKGLWL CPPPKEVEVD LSTLQPPSEW YKSCSEVNCH PLSIKLDPIS NSRININSAS GRASNDSQAP SVQPQKCGPV DSTVVSMALK REQFSIPSMC
501: SESFSSHCTK SQDSVVRMRP DDTLVRRALI SDSVNGCDSV GPTVESHCHS LLSQNFDSEG HASHVVSMFG NSGARLHSSA PCMTTEAQVF VAPSRAYENS
601: SSLNAEGSDA VISSIAPQVH APSIPPQNCP RTSVAPHLCL PRSMAPHLRV LRKISKVHST NMPEAHYSSA ATMVPVICKP PLFGITQKGH GVHTSSMMCT
701: TPNVVLHGPD HPAKLADTER NAPSLINGAL RREVQVQRPN QGVDASSIIT QAADTLVALS AHGEKGW
101: KSSAVVVMDD QPLLVDFLSM TMVNLKTRKQ RSVSWLDGTG KWFFPSAFFD EGVDESRKLN MGSEGSGQGL TEGMVPKAPN ELVKQAVVET SSPVLQNSCI
201: PDILRKKIVP VERGSESFQF VQNLFLSGMG SFASPKNLLH IHRYSAEDVT AQCRLESFAR QMRLTRKKIG YADVRYGWLG SRKQDIVGVL INGFISTGQT
301: SHSSDMRTGV YLSPENRAFT SVGLCDVDEK GVQYMLLCRA ILGNMGTIKP GSQDEFLSIY DSGVDNCSNP SYYVIWPSKL GTHISLEYLI SFRLTPEIQD
401: YLLHLKGLWL CPPPKEVEVD LSTLQPPSEW YKSCSEVNCH PLSIKLDPIS NSRININSAS GRASNDSQAP SVQPQKCGPV DSTVVSMALK REQFSIPSMC
501: SESFSSHCTK SQDSVVRMRP DDTLVRRALI SDSVNGCDSV GPTVESHCHS LLSQNFDSEG HASHVVSMFG NSGARLHSSA PCMTTEAQVF VAPSRAYENS
601: SSLNAEGSDA VISSIAPQVH APSIPPQNCP RTSVAPHLCL PRSMAPHLRV LRKISKVHST NMPEAHYSSA ATMVPVICKP PLFGITQKGH GVHTSSMMCT
701: TPNVVLHGPD HPAKLADTER NAPSLINGAL RREVQVQRPN QGVDASSIIT QAADTLVALS AHGEKGW
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.