Factsheet for PGSC0003DMT400026644

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g025310.2.1	Tomato	nucleus	91.34	93.7
CDY51707	Canola	cytosol	41.88	73.42
CDX92881	Canola	cytosol	41.52	70.55
KRG95684	Soybean	cytosol, nucleus, peroxisome	62.45	58.84
KRH67403	Soybean	cytosol, nucleus, plastid	62.09	58.11
KRH32193	Soybean	cytosol, nucleus, plastid	61.37	57.43
PGSC0003DMT400065559	Potato	nucleus	57.76	56.74
PGSC0003DMT400051915	Potato	cytosol	57.4	55.99
TraesCS6B01G416500.1	Wheat	nucleus	36.82	53.4
GSMUA_AchrUn_...	Banana	nucleus	51.26	48.97
GSMUA_Achr8P18980_001	Banana	nucleus	48.01	48.72
GSMUA_Achr6P36550_001	Banana	nucleus	48.74	48.56
Os04t0515900-01	Rice	nucleus	48.74	48.56
GSMUA_Achr5P18670_001	Banana	nucleus	47.65	48.35
GSMUA_Achr11P...	Banana	nucleus	45.49	48.09
GSMUA_Achr1P20530_001	Banana	cytosol, nucleus, plastid	47.29	47.29
GSMUA_Achr11P...	Banana	nucleus	46.93	46.76
GSMUA_Achr1P10860_001	Banana	nucleus	49.1	46.74
HORVU2Hr1G089210.4	Barley	cytosol, mitochondrion, nucleus	47.29	46.45
GSMUA_AchrUn_...	Banana	nucleus	42.6	45.91
Zm00001d003052_P001	Maize	cytosol, mitochondrion, nucleus	48.38	45.12
VIT_07s0005g03610.t01	Wine grape	mitochondrion, nucleus	39.35	44.49
CDY35197	Canola	nucleus	53.43	44.31
TraesCS6B01G416400.1	Wheat	nucleus	46.93	43.77
Zm00001d025861_P001	Maize	cytosol, nucleus, plastid	46.21	43.69
EES05451	Sorghum	nucleus	47.29	43.38
CDY38380	Canola	nucleus	53.79	43.31
TraesCS6D01G362900.1	Wheat	nucleus	47.29	43.23
TraesCS6A01G378600.1	Wheat	nucleus	47.65	43.14
KXG26719	Sorghum	nucleus	45.13	43.1
Bra011037.1-P	Field mustard	nucleus	53.43	43.02
TraesCS6B01G416300.1	Wheat	nucleus	47.65	42.72
AT4G28530.1	Thale cress	nucleus	54.15	42.61
Zm00001d051140_P001	Maize	cytosol, mitochondrion, nucleus	45.13	42.52
CDY14236	Canola	cytosol	51.26	42.26
Zm00001d018435_P001	Maize	cytosol, mitochondrion, nucleus	45.13	42.23
HORVU0Hr1G017490.7	Barley	nucleus	47.29	42.12
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	46.57	42.02
CDX97445	Canola	cytosol	50.9	41.96
TraesCS6D01G362800.1	Wheat	nucleus	46.93	41.67
TraesCS2A01G382400.1	Wheat	nucleus	46.57	41.61
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	47.29	41.59
Bra024194.1-P	Field mustard	nucleus	52.35	41.31
EES07725	Sorghum	cytosol	45.13	41.25
Bra010362.1-P	Field mustard	nucleus	51.62	41.21
TraesCS6A01G378500.1	Wheat	nucleus	46.21	41.16
Zm00001d051956_P001	Maize	cytosol, mitochondrion, nucleus	44.04	40.94
Os02t0810900-01	Rice	nucleus	46.57	38.97
Os10t0477600-01	Rice	nucleus	43.32	37.04
Os03t0109000-01	Rice	nucleus	37.91	35.35
PGSC0003DMT400056916	Potato	nucleus	37.55	29.8
PGSC0003DMT400050262	Potato	nucleus	35.38	29.52
PGSC0003DMT400083083	Potato	cytosol	34.66	28.57
PGSC0003DMT400003380	Potato	nucleus	33.21	28.48
PGSC0003DMT400074048	Potato	nucleus	31.05	28.2
PGSC0003DMT400013753	Potato	nucleus	31.77	26.27
PGSC0003DMT400076103	Potato	nucleus	32.85	26.15
PGSC0003DMT400025690	Potato	nucleus	32.49	25.35
PGSC0003DMT400032280	Potato	nucleus	22.38	21.6
CDX92880	Canola	nucleus	11.91	16.67
CDY51708	Canola	nucleus	11.91	16.58
PGSC0003DMT400038464	Potato	nucleus	32.13	11.66

Protein Annotations

EntrezGene:102596236	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	UniProt:M1ANH8	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
EnsemblPlantsGene:PGSC0003DMG400010294	PGSC:PGSC0003DMG400010294	EnsemblPlants:PGSC0003DMT400026644	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF4
SUPFAM:SSF101941	UniParc:UPI00029545FB	RefSeq:XP_006351666.1	SEG:seg	:	:

Description

NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010294]

Coordinates

chr9:+:50032040..50036751

Molecular Weight (calculated)

32264.9 Da

IEP (calculated)

5.594

GRAVY (calculated)

-0.730

Length

277 amino acids

Sequence
(BLAST)

001: MGLRDIGATL PPGFRFYPSD EELVCHYLFK KIANEDVLKG TLIEIDLHTC EPWQLPEMAK LNSSEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV
101: VDPKTRTIVG MRKTLVFYMN RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFHKAKAE NNNNNNNNNI FNTQNMYEVG VNSSPNMDQS HIALPYAAFS
201: QRQVGHQSQK LFDLMEPNNN QSSYVQLMSQ EMKEPQSNDE MAEDDDEYGF LLDMNFEDPN LQDGSRSTAF EHWEHVI

Best Arabidopsis Sequence Match ( AT4G28530.1 )
(BLAST)

001: MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VDDDDDDVDE ALKGSTDLVE IDLHICEPWE LPDVAKLNAK EWYFFSFRDR KYATGYRTNR
101: ATVSGYWKAT GKDRTVMDPR TRQLVGMRKT LVFYRNRAPN GIKTTWIMHE FRLECPNIPP KEDWVLCRVF NKGRDSSLQD NNYYNNDNQT QRLEVNDAPD
201: LNYNNQLPPL LSSPPHNHQH EKMKIQVCDQ WEQLMKQPSR TTGHPYHHHC HHQTIACGWE QMMIGSLSSP SSHGPDHESL LNLLYVDNNN SVNISGDHHQ
301: NYEKILLSSL DMTSLDHDKT CMGSSSDGGM VSDLHMECGG LSFETENILA FQ

Arabidopsis Description

anac074At4g28530 [Source:UniProtKB/TrEMBL;Acc:Q8GUJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.