Factsheet for TraesCS2B01G112000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G061100.3
TraesCS2B01G074500.1
TraesCS2D01G060100.3
TraesCS4A01G258200.3
TraesCS4B01G056200.1
TraesCS4D01G056600.1
TraesCS5A01G203800.1
TraesCS5B01G202500.1
TraesCS5D01G210400.1
TraesCS7A01G461800.1
TraesCS7B01G363200.2
TraesCS7D01G450100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	TraesCS7A01G461800.1	AT1G30460.1	16897494
AT3G06560.1	TraesCS7B01G363200.2	AT1G30460.1	16897494
AT3G06560.1	TraesCS7D01G450100.1	AT1G30460.1	16897494
AT3G06560.1	TraesCS7A01G461800.1	AT1G30460.1	18479511
AT3G06560.1	TraesCS7B01G363200.2	AT1G30460.1	18479511
AT3G06560.1	TraesCS7D01G450100.1	AT1G30460.1	18479511
AT3G06560.1	TraesCS5A01G203800.1	AT2G01730.1	16897494
AT3G06560.1	TraesCS5B01G202500.1	AT2G01730.1	16897494
AT3G06560.1	TraesCS5D01G210400.1	AT2G01730.1	16897494
AT3G06560.1	TraesCS2A01G061100.3	AT5G51660.1	16897494
AT3G06560.1	TraesCS2B01G074500.1	AT5G51660.1	16897494
AT3G06560.1	TraesCS2D01G060100.3	AT5G51660.1	16897494
AT3G06560.1	TraesCS4A01G258200.3	AT5G58040.1	18479511
AT3G06560.1	TraesCS4B01G056200.1	AT5G58040.1	18479511
AT3G06560.1	TraesCS4D01G056600.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	90.58	96.59
TraesCS2D01G095000.1	Wheat	cytosol	94.92	95.27
HORVU0Hr1G029140.2	Barley	cytosol	80.23	92.81
HORVU0Hr1G035930.1	Barley	cytosol	80.23	92.81
HORVU2Hr1G016100.3	Barley	cytosol	75.89	76.04
Os07t0688500-00	Rice	cytosol	68.36	69.27
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	63.28	62.69
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	64.6	62.14
TraesCS4B01G180500.1	Wheat	nucleus	54.05	53.15
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	46.89	44.7
CDY24682	Canola	nucleus	41.05	44.58
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	41.05	43.69
AT3G06560.1	Thale cress	nucleus	41.43	43.39
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	38.61	42.8
CDY05277	Canola	nucleus	41.24	42.69
Bra029588.1-P	Field mustard	nucleus	41.05	42.41
VIT_05s0077g00650.t01	Wine grape	plastid	44.63	42.1
Solyc12g099180.1.1	Tomato	cytosol	33.9	41.38
PGSC0003DMT400011757	Potato	nucleus	40.3	38.21
TraesCS2B01G340000.1	Wheat	nucleus	26.74	27.0
TraesCS2B01G473300.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.12	25.62
TraesCS2B01G473400.1	Wheat	plastid	15.82	23.01
TraesCS7B01G270600.4	Wheat	nucleus	30.51	22.34
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	28.44	21.54
TraesCS4B01G068100.1	Wheat	nucleus	27.31	19.89

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom
SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	EnsemblPlantsGene:TraesCS2B01G112000	EnsemblPlants:TraesCS2B01G112000.1	TIGR:cd05402
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:74247264..74252163

Molecular Weight (calculated)

60270.7 Da

IEP (calculated)

6.359

GRAVY (calculated)

-0.120

Length

531 amino acids

Sequence
(BLAST)

001: MAAYCPLPAM APDLPVWTHA APATPEPQTL PIFMYPPPPP PLPAGRRLLP WPVAHRPPPD FFFEMDYRRT HSLVQFLTDE GAIPTPEEEE TREQVIRELK
101: KIVTDWAKTV ACEERVPPRR VTATVLTYGS YTLGAHGPES DIDALCVGPC IANLPQHFFV VLRQILKCRP EVSGLQTVEN AKVPLMRFRF SGISVDLTYA
201: QLPVLDAVQA INTSSPQYLR RLDSRSWKSL SGVRVNEQIV QLVPNQEKFQ VLLRCIKLWA RRRGLHCHLL GFFAGIHLAI LAAYVCQKFP NATANGLFTM
301: FFEIFAHWPW HIPVDLHGQQ TNCTRSDGCL MPIVMPCSPP ELCASNMTEG TFRKIREELM RGYVLTKDLG SHEFEWAWIF EPFPYSTTYE QFLCIALCAP
401: TSEELHDWAG WVKSRFPYLI LKLEDNGIEC DPNSSQEVDH TVIKPNIVYH WGLIPQSDTL LDPISLKEDF MKYVINDVYG KVKCTDSELT LSLVGASELP
501: KSMYNDSFYS RHLHQYGVAY QAAADCWSTI G

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.