Factsheet for TraesCS2A01G096500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G061100.3
TraesCS2B01G074500.1
TraesCS2D01G060100.3
TraesCS4A01G258200.3
TraesCS4B01G056200.1
TraesCS4D01G056600.1
TraesCS5A01G203800.1
TraesCS5B01G202500.1
TraesCS5D01G210400.1
TraesCS7A01G461800.1
TraesCS7B01G363200.2
TraesCS7D01G450100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	TraesCS7A01G461800.1	AT1G30460.1	16897494
AT3G06560.1	TraesCS7B01G363200.2	AT1G30460.1	16897494
AT3G06560.1	TraesCS7D01G450100.1	AT1G30460.1	16897494
AT3G06560.1	TraesCS7A01G461800.1	AT1G30460.1	18479511
AT3G06560.1	TraesCS7B01G363200.2	AT1G30460.1	18479511
AT3G06560.1	TraesCS7D01G450100.1	AT1G30460.1	18479511
AT3G06560.1	TraesCS5A01G203800.1	AT2G01730.1	16897494
AT3G06560.1	TraesCS5B01G202500.1	AT2G01730.1	16897494
AT3G06560.1	TraesCS5D01G210400.1	AT2G01730.1	16897494
AT3G06560.1	TraesCS2A01G061100.3	AT5G51660.1	16897494
AT3G06560.1	TraesCS2B01G074500.1	AT5G51660.1	16897494
AT3G06560.1	TraesCS2D01G060100.3	AT5G51660.1	16897494
AT3G06560.1	TraesCS4A01G258200.3	AT5G58040.1	18479511
AT3G06560.1	TraesCS4B01G056200.1	AT5G58040.1	18479511
AT3G06560.1	TraesCS4D01G056600.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G029140.2	Barley	cytosol	85.54	92.81
HORVU0Hr1G035930.1	Barley	cytosol	85.54	92.81
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	96.59	90.58
TraesCS2D01G095000.1	Wheat	cytosol	95.98	90.36
HORVU2Hr1G016100.3	Barley	cytosol	81.12	76.23
Os07t0688500-00	Rice	cytosol	72.29	68.7
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	65.66	61.01
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	66.87	60.33
TraesCS4A01G123900.1	Wheat	nucleus	58.23	53.7
CDY24682	Canola	nucleus	43.98	44.79
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	49.8	44.52
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	43.57	43.49
AT3G06560.1	Thale cress	nucleus	44.18	43.39
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	41.37	43.01
CDY05277	Canola	nucleus	44.18	42.88
Bra029588.1-P	Field mustard	nucleus	43.98	42.61
Solyc12g099180.1.1	Tomato	cytosol	36.55	41.84
VIT_05s0077g00650.t01	Wine grape	plastid	47.19	41.74
PGSC0003DMT400011757	Potato	nucleus	42.77	38.04
TraesCS2A01G073200.1	Wheat	cytosol	15.66	28.36
TraesCS2A01G451700.1	Wheat	nucleus	29.52	27.02
TraesCS2A01G342300.1	Wheat	nucleus	28.31	26.81
TraesCS2A01G451800.1	Wheat	nucleus	29.32	26.74
TraesCS7A01G357100.1	Wheat	nucleus	31.93	21.78
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	29.72	21.2
TraesCS4A01G246800.1	Wheat	nucleus	28.92	19.78

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom
SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	EnsemblPlantsGene:TraesCS2A01G096500	EnsemblPlants:TraesCS2A01G096500.1	TIGR:cd05402
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:50151717..50156545

Molecular Weight (calculated)

56779.2 Da

IEP (calculated)

6.550

GRAVY (calculated)

-0.193

Length

498 amino acids

Sequence
(BLAST)

001: MYPPPPPPLP AGRRLLPWPV PHRPPPDFFF EMDYRRTHSL VQFLADEGAI PTPEEEETRE QVIRELKKIV TDWAKAVACE ERVPPRRVTA TVLTYGSYTL
101: GAHGPESDID ALCVGPCIAN LPHHFFAVLR QILKCRPEVS GLQTVENAKV PLMRFRFSGI SVDLTYAQLP VLDAVQAINT SSPQYLRKLD SRSWKSLSGV
201: RVNEQIVQLV PDQEKFQVLL RCIKLWARRR GLHCHLLGFF AGIHLAILAA YVCQRFPNAT ANGLFTMFFE IFAHWPWHIP VDLHGQQTNC TRSDGCLMPI
301: VMPCSPPELC ASNMTEGTFR KIREELMRGY VLTKDLGSHD FEWAWIFEPF PYSTTYEQFL RIALCAPTSE ELHDWTGWVK SRFPYLILKL EDNGIECDPN
401: SSQEVDHTVI KPNIVYHWGL IPQSDTLLDS SSLKEDFMKY VINDVYGKVK CTNSELTLSI VGASELPKSM YNDSFYSRHL HQYGVGYQAA DDCWSTIG

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.