Factsheet for VIT_08s0007g03880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32653	Soybean	nucleus	41.7	46.36
PGSC0003DMT400007032	Potato	nucleus	43.91	45.51
Solyc09g009120.2.1	Tomato	nucleus	41.88	43.53
KRG96135	Soybean	nucleus	39.85	43.33
KRH67849	Soybean	nucleus	40.41	42.36
KRG96139	Soybean	nucleus	39.58	41.65
AT2G36480.1	Thale cress	nucleus	35.61	40.08
CDY33156	Canola	nucleus	29.7	39.08
VIT_18s0086g00630.t01	Wine grape	cytosol	2.49	38.57
Solyc10g083590.1.1	Tomato	nucleus	38.75	38.11
Bra005265.1-P	Field mustard	nucleus, plastid	35.06	38.04
CDX75035	Canola	nucleus	34.87	37.31
GSMUA_Achr10P...	Banana	nucleus	30.72	37.21
GSMUA_Achr11P...	Banana	nucleus	30.72	32.46
Os09t0566100-01	Rice	nucleus	31.83	32.27
OQU89013	Sorghum	nucleus	30.26	31.97
VIT_18s0086g00620.t01	Wine grape	extracellular	3.97	31.39
TraesCS4D01G010100.1	Wheat	plastid	28.32	30.76
GSMUA_Achr3P22800_001	Banana	nucleus	32.75	30.34
TraesCS4A01G301900.1	Wheat	endoplasmic reticulum, extracellular, golgi	24.63	29.93
CDY69913	Canola	nucleus	18.91	28.59
HORVU4Hr1G001840.2	Barley	nucleus	28.87	28.2
Zm00001d019856_P005	Maize	plastid	28.69	28.17
Zm00001d005350_P005	Maize	plastid	29.98	27.99
TraesCS4B01G012000.1	Wheat	cytosol	20.76	27.27
VIT_10s0116g00720.t01	Wine grape	nucleus	22.69	25.55

Protein Annotations

Gene3D:1.25.40.90	EntrezGene:100251089	wikigene:100251089	EntrezGene:100853741	wikigene:100853741	MapMan:16.2.1.5.2
EMBL:AM423532	ProteinID:CAN62314	ProteinID:CAN62314.1	ProteinID:CCB55401	ProteinID:CCB55401.1	InterPro:CID_dom
InterPro:ENTH_VHS	UniProt:F6HKH9	EMBL:FN595991	GO:GO:0000993	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005849
GO:GO:0006139	GO:GO:0006369	GO:GO:0006378	GO:GO:0006379	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR013087
EntrezGene:LOC100251089	wikigene:LOC100251089	EntrezGene:LOC100853741	wikigene:LOC100853741	PFAM:PF04818	ScanProsite:PS00028
PFscan:PS50157	PFscan:PS51391	PANTHER:PTHR15921	PANTHER:PTHR15921:SF5	InterPro:RNA_pol_II-bd	SMART:SM00582
SUPFAM:SSF48464	UniParc:UPI0001983E0D	ArrayExpress:VIT_08s0007g03880	EnsemblPlantsGene:VIT_08s0007g03880	EnsemblPlants:VIT_08s0007g03880.t01	RefSeq:XP_002277320
RefSeq:XP_002277320.2	RefSeq:XP_003632752	RefSeq:XP_003632752.1	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:17860300..17869253

Molecular Weight (calculated)

116884.0 Da

IEP (calculated)

7.153

GRAVY (calculated)

-0.559

Length

1084 amino acids

Sequence
(BLAST)

0001: MESSRRSFDR SREPGFKKPR LAEEAERGPN PNGRPFPQRP GAAPAASRLK TNERDVDRDD LGRGLYQQQH QELVTQYKTA LAELTFNSKP IITNLTIIAG
0101: ENLHAAKAIA ATVCTNILEV PSEQKLPSLY LLDSIVKNIG RDYIKYFAAR LPEVFCKAYR QVDPSIHPGM RHLFGTWKGV FPLAPLQMIE KELGFPPAIN
0201: GSSPGIATSR SDSQSQRPPH SIHVNPKYLE ARQRLQQSSR TKGAANDVTG TMVNSTEDAD RLDRTAGINA GRPWDDLPAK SIQHSHREAI GELVEKKIGA
0301: PYGDYEYGTD LSRNPGLGIG RPSEQGHDKP WYKAGGRVVE TFSSQRNGFD IKHGFPNYPA PRSANADAHL QPTQSTVNRS NSGMSRSWKN SEEEEYMWDD
0401: MNSKMTEHSA ANHSKKDRWT PDDSEKLDFE NQLQKPQSIY DVGSSVDRET STDSMSSEQR EQGAFGHRMS SLWPLQEPHS TDGLKHSGTS TLILGHSEGY
0501: PTVSGLSTSA SSSLARTGLR PLMGSSHAGA SGFGFLTNAS SGSTTGTVGQ QRLQSVGAAS PSGQSPMHQP DHLPVHSLPL PDIKASQFSG QFNIGSHKQF
0601: TLDALPKLIQ KAQLGDLQKL LPHNLQSLSP AVPSVPIRHH APFSPQLQPD PLQPEPSGQA QKTSLPQTSI FEAPSTIENP VLEHSNYPAA ESTGKLSTSN
0701: LLAAVMKSGI LSNSSVSGSI PKTSFQDTGA VLQSVIQPPL PSGPPPAQFT SSGPRVATAS LSGPSHDSKS ASNLSQRKVE RPPLPPGPPP PSSLAGSGLP
0801: QSSNVTSNAS NPIANLLSSL VAKGLISASK TESSTHVPTQ MPARLQNQSA GISTISPIPV SSVSVASSVP LSSTMDAVSH TEPAAKASVA VTQSTSVEVK
0901: NLIGFEFKSD IIRESHPSVI SELFDDLPHQ CSICGLRLKL RERLDRHLEW HALKKSEPNG LNRASRSWFV NSGEWIAEVA GFPTEAKSTS PAGESGKPLE
1001: TSEQMVPADE NQCVCVLCGE VFEDFYSQEM DKWMFRGAVK MTVPSQGGEL GTKNQGPIVH ADCITESSVH DLGLACDIKV EKDP

Best Arabidopsis Sequence Match ( AT2G36480.1 )
(BLAST)

001: MENPRRPFDR SRDPGPMKKP RLSEESIRPV NSNARQFLSQ RTLGTATAVT VPPASSRFRV SGRETESSIV SDPSREAYQP QPVHPHYELV NQYKSALAEL
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE

Arabidopsis Description

ENTH/VHS family protein [Source:TAIR;Acc:AT2G36480]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.