Factsheet for Solyc10g083590.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g009120.2.1	Tomato	nucleus	42.83	45.25
VIT_08s0007g03880.t01	Wine grape	nucleus	38.11	38.75
KRH32653	Soybean	nucleus	30.94	34.97
KRG96135	Soybean	nucleus	29.67	32.8
KRG96139	Soybean	nucleus	29.49	31.55
KRH67849	Soybean	nucleus	29.22	31.14
AT2G36480.1	Thale cress	nucleus	26.04	29.8
GSMUA_Achr10P...	Banana	nucleus	23.77	29.27
CDY33156	Canola	nucleus	21.78	29.13
Bra005265.1-P	Field mustard	nucleus, plastid	25.5	28.13
CDX75035	Canola	nucleus	25.77	28.04
GSMUA_Achr11P...	Banana	nucleus	25.23	27.1
TraesCS4D01G010100.1	Wheat	plastid	24.14	26.65
Os09t0566100-01	Rice	nucleus	25.68	26.47
OQU89013	Sorghum	nucleus	23.96	25.73
TraesCS4A01G301900.1	Wheat	endoplasmic reticulum, extracellular, golgi	20.6	25.45
GSMUA_Achr3P22800_001	Banana	nucleus	26.04	24.53
HORVU4Hr1G001840.2	Barley	nucleus	24.68	24.5
Solyc12g094490.1.1	Tomato	nucleus	20.69	23.38
Zm00001d005350_P005	Maize	plastid	24.23	23.0
Zm00001d019856_P005	Maize	plastid	22.78	22.74
TraesCS4B01G012000.1	Wheat	cytosol	16.79	22.42
CDY69913	Canola	nucleus	13.43	20.64

Protein Annotations

Gene3D:1.25.40.90	MapMan:16.2.1.5.2	InterPro:CID_dom	ncoils:Coil	InterPro:ENTH_VHS	GO:GO:0000993
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737
GO:GO:0005849	GO:GO:0006139	GO:GO:0006369	GO:GO:0006378	GO:GO:0006379	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR013087
UniProt:K4D3E6	PFAM:PF04818	ScanProsite:PS00028	PFscan:PS50157	PFscan:PS51391	PANTHER:PTHR15921
PANTHER:PTHR15921:SF5	InterPro:RNA_pol_II-bd	SMART:SM00582	SUPFAM:SSF48464	EnsemblPlantsGene:Solyc10g083590.1	EnsemblPlants:Solyc10g083590.1.1
UniParc:UPI0002769F28	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:-:63369833..63380859

Molecular Weight (calculated)

121275.0 Da

IEP (calculated)

6.385

GRAVY (calculated)

-0.633

Length

1102 amino acids

Sequence
(BLAST)

0001: MSTPPPSAPP QIPQIPSGCS VFESPIKLRP VKFLDSMVRV WFWFIEMKSS RRSCLESDTK KPRLNEDSIG INRISNEGSF IPQRAVNSGS VAPRFRAIDS
0101: WEDPENSVPL CEPYQPQHQQ QQQLISEYKR ALAELTINSK PIITNLTIIA GENMRDAKAI AAIICANILE IPSEQKLPSL YLLDSIVKNI GRDYIKYFAA
0201: RLPEVFCKAY RQVEPSVHSG MQRLFVTWRK VFPPQQLQLI EKELGFTTGV NGSSSGARRD DSKAQQTAHS IHVNPKYLEA RQCLQQSTRV KGSADDITPG
0301: DIQKPERATS VGSERSWFDL SAKFVQKEQL NERIREKTTS AAYGDPEYVS DLSRGSGFGL RITGEKLKEE GRDKSWYNLA NGKIIQRNGL DLKHGVQSLS
0401: QNTANSDAYP QPTHSFANQS DTLMGRSWQS SDEEEYMWDD VNCADKDQRA SKEPYKSGLD NQHPRPQNIF GLKAESEASA DSFSREDNGQ ESSENQISSM
0501: WSDEARHLAS VRSTPDHPRG YLPSFSGSTA TNSIVGKSFQ SQKDSSHEGT PSYGIAKTAS LSRGTIMQPL ETQGAAPPSL ESARRQLPLS PSISTGNFNQ
0601: VVNSRTSEYH TQTESHADPR MSQFSRRSNL DPRKQVLPMT SQSAHLISSQ ISHTSRYNPS SVISSFQEEH HVSFPEKIQQ ESPESEFSIP SQKSIVTQLS
0701: GFADHSSTVP SILHGSESSS QTSMSSLLAA VMKSGVLNSS SSVGTPLNSR DKGPLSSQAG AQSPLPSGPP IQLLSSGPKA PRSVVSIQSD RNASNPPSYS
0801: QRNGERPRLP PDSAPTPVGS ESLQAPNVVN AASNPVAKLL NSLMAKGLIS ASKEEFPTST PPPTPPQTQF QCPPASISSI PGVSAPITSP TYSSQKDELS
0901: LSKPAAKIPV ALPQSNKEER EDAFKPGVIR ESNPGVISEL LDDVPHQCGI CGLRLKLRLQ LDRHLEWHAL RNPDGKLLHS ERRWYLNFGE WIDGTGSIPH
1001: SGILAGPTGV SSKLSECTEV MVPADESQCV CVLCGQGFED FYDEKSDKWM FKGAIYMDDS LNESGIQNCI VHENCTSEGS QNWMLKDDIK QESEDWFSDF
1101: MD

Best Arabidopsis Sequence Match ( AT2G36480.1 )
(BLAST)

001: MENPRRPFDR SRDPGPMKKP RLSEESIRPV NSNARQFLSQ RTLGTATAVT VPPASSRFRV SGRETESSIV SDPSREAYQP QPVHPHYELV NQYKSALAEL
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE

Arabidopsis Description

ENTH/VHS family protein [Source:TAIR;Acc:AT2G36480]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.