Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007032 | Potato | nucleus | 84.18 | 83.94 |
| Solyc10g083590.1.1 | Tomato | nucleus | 45.25 | 42.83 |
| VIT_08s0007g03880.t01 | Wine grape | nucleus | 43.53 | 41.88 |
| KRH32653 | Soybean | nucleus | 34.9 | 37.33 |
| KRG96135 | Soybean | nucleus | 33.46 | 35.01 |
| AT2G36480.1 | Thale cress | nucleus | 32.21 | 34.89 |
| KRH67849 | Soybean | nucleus | 33.65 | 33.95 |
| Bra005265.1-P | Field mustard | nucleus, plastid | 32.21 | 33.63 |
| CDX75035 | Canola | nucleus | 32.41 | 33.37 |
| KRG96139 | Soybean | nucleus | 32.89 | 33.3 |
| CDY33156 | Canola | nucleus | 26.27 | 33.25 |
| GSMUA_Achr10P... | Banana | nucleus | 27.32 | 31.84 |
| Os09t0566100-01 | Rice | nucleus | 30.58 | 29.84 |
| GSMUA_Achr11P... | Banana | nucleus | 29.34 | 29.82 |
| OQU89013 | Sorghum | nucleus | 29.15 | 29.63 |
| TraesCS4D01G010100.1 | Wheat | plastid | 27.8 | 29.06 |
| TraesCS4A01G301900.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 23.49 | 27.47 |
| GSMUA_Achr3P22800_001 | Banana | nucleus | 30.58 | 27.27 |
| HORVU4Hr1G001840.2 | Barley | nucleus | 28.38 | 26.67 |
| Zm00001d005350_P005 | Maize | plastid | 29.05 | 26.1 |
| Zm00001d019856_P005 | Maize | plastid | 27.13 | 25.63 |
| TraesCS4B01G012000.1 | Wheat | cytosol | 19.56 | 24.73 |
| Solyc12g094490.1.1 | Tomato | nucleus | 23.01 | 24.62 |
| CDY69913 | Canola | nucleus | 16.11 | 23.43 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:16.2.1.5.2 | InterPro:CID_dom | InterPro:ENTH_VHS | GO:GO:0000993 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005849 |
| GO:GO:0006139 | GO:GO:0006369 | GO:GO:0006378 | GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR013087 | UniProt:K4CQU1 |
| PFAM:PF04818 | ScanProsite:PS00028 | PFscan:PS50157 | PFscan:PS51391 | PANTHER:PTHR15921 | PANTHER:PTHR15921:SF5 |
| InterPro:RNA_pol_II-bd | SMART:SM00582 | SUPFAM:SSF48464 | EnsemblPlantsGene:Solyc09g009120.2 | EnsemblPlants:Solyc09g009120.2.1 | UniParc:UPI000276C2E0 |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:2454280..2462187
Molecular Weight (calculated)
113003.0 Da
IEP (calculated)
6.769
GRAVY (calculated)
-0.646
Length
1043 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEMEGSRRPF DRSRLEPGPK KPRLVEAPIG TERGSNGRSF IPQRGAGNSR IRASDKGGDS ENSDSIRGSF QQQTQHQELV SQYKTALAEL TFNSKPIITN
0101: LTIIAGENLQ AAKAIAATIC NNIIEVPTEQ KLPSLYLLDS IVKNIGRDYI KYFATRLPEV FSKAYRQVEP SVHPGMRHLF GTWKGVFPPQ QLQLIEKELG
0201: FTTGVNGSSS GTSRPDPQAQ RPAHSIHVNP KYLEARQRLQ QSTRAKGAAS DISSTVNVNE DAERPERTTS VSSGRSWIDP SIKRAQKEKL NEHVPEKTIS
0301: AAYGDSDYAS DLPSRAAFGV GRGGERFKEQ GFDKPWYDSG AGKILSQRSS LDTKHDFQSI PQKSATSDAH PQLIPSLPNR TSTLTDRSWK NSEEEEYMWD
0401: DVNNAAKDRW ASEDSDKSDL ENQLRRPQSI REVGLRADSE ASADSPSAEE RGPASFGNQM SAMWSRGSHA LDGARHSASV QGAPVHSEGY QTSFSGLSKV
0501: ANSVSRASYK LQTGSVHVGT QNIGPMNATL ESRGSIVQQG ETLRAASPSA QSPMHHLPPS PSLITSNSNQ VINSPAEQYQ MQTSSRSDPR LSQISRRSNL
0601: DPRNQYAQES LTMPSRNTIS VNSQRQHPPS LQNSSALSSS HQLRQKVQRE SLESEYSVQT KNSTVPEISG FPDPSSTSSL LAAVLKSGVI GNKSSSGTTS
0701: SSLDKGALSS QASAQPHPAQ FSTSGPRIPP ASVTSLSMDR NASNSPNYSQ RNVEQPPLPP GLPPTLAGTA SSQTPNAPNI ASSPLSSILS TLVAKGLISA
0801: SKKDPPIYTP SDTPPQTQNL IPPASSISTP ALSAPTSSSV PSSAHKDELS HSKPSAETPE VLLQSMKEEA KSLIGLVFKP DVIRNSHPAV ISDLVDDVPL
0901: QCGICGFGFK FQVKLDRHLE WHSLRNPDVK LLNNSRKWYL NSGEWIAAFG GLPCGDKSEG PAGGSSETSE CTETMVPADE CQCVCVLCGE FFEDFYNEES
1001: DEWMFKDAVY MSIPSESDCQ GPIVHKNCIS ESSCQELGFV LDA
0101: LTIIAGENLQ AAKAIAATIC NNIIEVPTEQ KLPSLYLLDS IVKNIGRDYI KYFATRLPEV FSKAYRQVEP SVHPGMRHLF GTWKGVFPPQ QLQLIEKELG
0201: FTTGVNGSSS GTSRPDPQAQ RPAHSIHVNP KYLEARQRLQ QSTRAKGAAS DISSTVNVNE DAERPERTTS VSSGRSWIDP SIKRAQKEKL NEHVPEKTIS
0301: AAYGDSDYAS DLPSRAAFGV GRGGERFKEQ GFDKPWYDSG AGKILSQRSS LDTKHDFQSI PQKSATSDAH PQLIPSLPNR TSTLTDRSWK NSEEEEYMWD
0401: DVNNAAKDRW ASEDSDKSDL ENQLRRPQSI REVGLRADSE ASADSPSAEE RGPASFGNQM SAMWSRGSHA LDGARHSASV QGAPVHSEGY QTSFSGLSKV
0501: ANSVSRASYK LQTGSVHVGT QNIGPMNATL ESRGSIVQQG ETLRAASPSA QSPMHHLPPS PSLITSNSNQ VINSPAEQYQ MQTSSRSDPR LSQISRRSNL
0601: DPRNQYAQES LTMPSRNTIS VNSQRQHPPS LQNSSALSSS HQLRQKVQRE SLESEYSVQT KNSTVPEISG FPDPSSTSSL LAAVLKSGVI GNKSSSGTTS
0701: SSLDKGALSS QASAQPHPAQ FSTSGPRIPP ASVTSLSMDR NASNSPNYSQ RNVEQPPLPP GLPPTLAGTA SSQTPNAPNI ASSPLSSILS TLVAKGLISA
0801: SKKDPPIYTP SDTPPQTQNL IPPASSISTP ALSAPTSSSV PSSAHKDELS HSKPSAETPE VLLQSMKEEA KSLIGLVFKP DVIRNSHPAV ISDLVDDVPL
0901: QCGICGFGFK FQVKLDRHLE WHSLRNPDVK LLNNSRKWYL NSGEWIAAFG GLPCGDKSEG PAGGSSETSE CTETMVPADE CQCVCVLCGE FFEDFYNEES
1001: DEWMFKDAVY MSIPSESDCQ GPIVHKNCIS ESSCQELGFV LDA
001: MENPRRPFDR SRDPGPMKKP RLSEESIRPV NSNARQFLSQ RTLGTATAVT VPPASSRFRV SGRETESSIV SDPSREAYQP QPVHPHYELV NQYKSALAEL
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE
Arabidopsis Description
ENTH/VHS family protein [Source:TAIR;Acc:AT2G36480]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.