Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75035 | Canola | nucleus | 85.56 | 69.6 |
| AT2G36480.1 | Thale cress | nucleus | 62.38 | 53.37 |
| CDY69913 | Canola | nucleus | 40.05 | 46.03 |
| VIT_08s0007g03880.t01 | Wine grape | nucleus | 39.08 | 29.7 |
| KRH32653 | Soybean | nucleus | 32.04 | 27.08 |
| Solyc09g009120.2.1 | Tomato | nucleus | 33.25 | 26.27 |
| KRG96135 | Soybean | nucleus | 31.67 | 26.18 |
| PGSC0003DMT400007032 | Potato | nucleus | 33.13 | 26.1 |
| GSMUA_Achr10P... | Banana | nucleus | 27.91 | 25.7 |
| KRH67849 | Soybean | nucleus | 32.04 | 25.53 |
| TraesCS4A01G301900.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 27.55 | 25.45 |
| KRG96139 | Soybean | nucleus | 30.83 | 24.66 |
| TraesCS4B01G012000.1 | Wheat | cytosol | 23.06 | 23.03 |
| TraesCS4D01G010100.1 | Wheat | plastid | 27.06 | 22.34 |
| Solyc10g083590.1.1 | Tomato | nucleus | 29.13 | 21.78 |
| CDY16640 | Canola | nucleus | 20.15 | 21.45 |
| CDX94585 | Canola | nucleus | 19.54 | 21.18 |
| OQU89013 | Sorghum | nucleus | 25.97 | 20.86 |
| GSMUA_Achr11P... | Banana | nucleus | 25.73 | 20.66 |
| HORVU4Hr1G001840.2 | Barley | nucleus | 27.43 | 20.36 |
| Os09t0566100-01 | Rice | nucleus | 26.34 | 20.3 |
| CDX96143 | Canola | nucleus | 9.83 | 19.76 |
| CDY36205 | Canola | nucleus | 9.71 | 19.14 |
| GSMUA_Achr3P22800_001 | Banana | nucleus | 26.7 | 18.8 |
| Zm00001d005350_P005 | Maize | plastid | 26.21 | 18.6 |
| Zm00001d019856_P005 | Maize | plastid | 24.51 | 18.3 |
| CDY33157 | Canola | nucleus | 1.46 | 7.06 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:16.2.1.5.2 | GO:A0A078H5M2 | UniProt:A0A078H5M2 | EnsemblPlants:CDY33156 | ProteinID:CDY33156 |
| ProteinID:CDY33156.1 | InterPro:CID_dom | InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00053864001 | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR013087 | PFAM:PF04818 | ScanProsite:PS00028 |
| PFscan:PS50157 | PFscan:PS51391 | PANTHER:PTHR15921 | PANTHER:PTHR15921:SF5 | InterPro:RNA_pol_II-bd | SMART:SM00582 |
| SUPFAM:SSF48464 | UniParc:UPI0004EEE4D5 | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
BnaC04g08830DBnaC04g08830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5M2]
Coordinates
chrLK032308:-:9999..13200
Molecular Weight (calculated)
89976.3 Da
IEP (calculated)
6.523
GRAVY (calculated)
-0.606
Length
824 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVPSDQKLP TLYLLDSIVK NIGRDYIKYF AARLPEVFVK AYRQVDPPMR SNMRHLFGTW KGVFHPQILQ QIEKELGFNA RTGGPAAAVT TGRTDLQSQR
101: PLNSIHVNPK YLERQRLQQS GRTKVMVTDV PDIASNLTRD PDRLERVSST ASGGLWAGPA KVNTIRRPQK DSLSEPLYEK DMESISEEYE YASDLPHNSR
201: SVVKKVGPRI TDDGSGKQWY EAMSRGPDLI SDQREGLHTK SRVSNYATAR LENSESSGPS RNIGVPYDSW KNSEEEEFMW DMHSRVSETD VAIINPKIEF
301: QASDESERLE SKNHLLKRPR YSAVDPRLDP VNSYSREQKD SSILGPWTSS PRSLHDSEVF PSISAASNAA RKGIQPQSRI ASSGILPISG PVSDKQSKQN
401: VSKQDSGRAH SLTQRDPRAS RFPTKSQSDS VRPLSSSSQF KNTNTLELPD SSLVEKFDSK STAENARGQA NMNDLLAAVM KSGILSNNAT CGGSKEEMSQ
501: NGADPRALTL SAVSKDKTLP TSAAGAVSLT GVTSAQTSKE KSKASDPISS LLSSLVSKGL ISASKTELPS LAQCAAPSVS QDHSPDHSTS SYISVVPSDA
601: QPVVLVKKSP STAPKVAPVE TAKPEPENLI GLKFRADKIR ELHPWVISSL FDDLPHLCTS CGVRLKQKEE LDRHVEELHD KKKLELSGAN SKCRVWFPKA
701: DDWIAAKSRE LEPEYEEDLS EPESAGEDAP AVAADENQCA CILCGEMFED YFSQEMDQWM FKGASYLAIP PDESEANGPI VHAACLTKSS LPGLGVGNAI
801: KQVKGTCAGG SGGITGETGL VDFT
101: PLNSIHVNPK YLERQRLQQS GRTKVMVTDV PDIASNLTRD PDRLERVSST ASGGLWAGPA KVNTIRRPQK DSLSEPLYEK DMESISEEYE YASDLPHNSR
201: SVVKKVGPRI TDDGSGKQWY EAMSRGPDLI SDQREGLHTK SRVSNYATAR LENSESSGPS RNIGVPYDSW KNSEEEEFMW DMHSRVSETD VAIINPKIEF
301: QASDESERLE SKNHLLKRPR YSAVDPRLDP VNSYSREQKD SSILGPWTSS PRSLHDSEVF PSISAASNAA RKGIQPQSRI ASSGILPISG PVSDKQSKQN
401: VSKQDSGRAH SLTQRDPRAS RFPTKSQSDS VRPLSSSSQF KNTNTLELPD SSLVEKFDSK STAENARGQA NMNDLLAAVM KSGILSNNAT CGGSKEEMSQ
501: NGADPRALTL SAVSKDKTLP TSAAGAVSLT GVTSAQTSKE KSKASDPISS LLSSLVSKGL ISASKTELPS LAQCAAPSVS QDHSPDHSTS SYISVVPSDA
601: QPVVLVKKSP STAPKVAPVE TAKPEPENLI GLKFRADKIR ELHPWVISSL FDDLPHLCTS CGVRLKQKEE LDRHVEELHD KKKLELSGAN SKCRVWFPKA
701: DDWIAAKSRE LEPEYEEDLS EPESAGEDAP AVAADENQCA CILCGEMFED YFSQEMDQWM FKGASYLAIP PDESEANGPI VHAACLTKSS LPGLGVGNAI
801: KQVKGTCAGG SGGITGETGL VDFT
001: MENPRRPFDR SRDPGPMKKP RLSEESIRPV NSNARQFLSQ RTLGTATAVT VPPASSRFRV SGRETESSIV SDPSREAYQP QPVHPHYELV NQYKSALAEL
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE
Arabidopsis Description
ENTH/VHS family protein [Source:TAIR;Acc:AT2G36480]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.