Factsheet for Bra025558.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70267	Canola	cytosol, mitochondrion, plastid	99.38	99.38
AT5G40630.1	Thale cress	cytosol, mitochondrion, plastid	85.8	84.24
Bra023460.1-P	Field mustard	cytosol, mitochondrion	50.0	50.62
Bra006251.1-P	Field mustard	cytosol, mitochondrion	48.77	48.47
GSMUA_Achr6P06780_001	Banana	cytosol, mitochondrion	43.83	46.71
EES11012	Sorghum	mitochondrion	45.06	46.2
TraesCS2B01G360600.1	Wheat	mitochondrion	47.53	45.03
TraesCS6D01G194400.1	Wheat	mitochondrion	44.44	44.72
Zm00001d050988_P001	Maize	mitochondrion	40.12	44.52
HORVU6Hr1G053980.1	Barley	mitochondrion	43.83	44.38
GSMUA_AchrUn_...	Banana	cytosol	41.36	44.37
TraesCS6B01G240800.1	Wheat	mitochondrion	44.44	43.9
HORVU2Hr1G083680.2	Barley	cytosol, mitochondrion, plastid	45.68	43.79
EES11013	Sorghum	mitochondrion	43.21	43.21
TraesCS2A01G321700.1	Wheat	mitochondrion	45.06	43.2
TraesCS2D01G341100.1	Wheat	mitochondrion	45.06	43.2
TraesCS2A01G321900.1	Wheat	cytosol, mitochondrion, plastid	45.06	43.2
Zm00001d003264_P001	Maize	mitochondrion	44.44	43.11
TraesCS6A01G211300.1	Wheat	mitochondrion	41.98	43.04
TraesCS2D01G340900.1	Wheat	mitochondrion	45.06	42.94
TraesCS2B01G360700.1	Wheat	cytosol, mitochondrion	44.44	42.6
HORVU2Hr1G083660.1	Barley	plastid	44.44	42.35
TraesCS2A01G322100.1	Wheat	mitochondrion	44.44	42.35
TraesCS2A01G321800.1	Wheat	mitochondrion	44.44	42.11
Zm00001d017107_P001	Maize	mitochondrion	42.59	41.82
Os02t0597700-00	Rice	mitochondrion	43.21	41.67
EES05371	Sorghum	mitochondrion	41.36	41.61
OQU88071	Sorghum	mitochondrion	41.36	41.61
TraesCS2A01G322000.1	Wheat	cytosol, mitochondrion, plastid	44.44	41.38
Zm00001d012109_P001	Maize	mitochondrion	41.36	40.36
Zm00001d042449_P001	Maize	mitochondrion	40.12	39.63
TraesCS3B01G422300.1	Wheat	mitochondrion	37.65	37.65
TraesCS3A01G390300.1	Wheat	mitochondrion	37.65	37.65
TraesCS3A01G390600.1	Wheat	mitochondrion	37.65	37.65
TraesCS3D01G382600.1	Wheat	mitochondrion	37.04	37.04
TraesCS3B01G422400.1	Wheat	mitochondrion	37.04	37.04
TraesCS3D01G383200.1	Wheat	mitochondrion	37.04	36.81
TraesCS3D01G382700.1	Wheat	mitochondrion	37.04	36.81
HORVU3Hr1G081400.3	Barley	mitochondrion	37.04	36.59
TraesCS3A01G390400.1	Wheat	mitochondrion	35.8	35.8
TraesCS3D01G382800.1	Wheat	mitochondrion	35.8	35.15
TraesCS3D01G383000.1	Wheat	mitochondrion	35.8	35.15
TraesCS3A01G390500.1	Wheat	mitochondrion	35.8	35.15
Os01t0907200-00	Rice	mitochondrion	40.74	33.67
HORVU2Hr1G083700.4	Barley	plastid	45.68	32.03
OQU80203	Sorghum	mitochondrion	30.25	32.03
EES14399	Sorghum	cytosol	30.86	31.85
Bra006876.1-P	Field mustard	cytosol	24.07	14.77
Bra029142.1-P	Field mustard	cytosol	28.4	14.02
Bra029288.1-P	Field mustard	cytosol	25.31	13.8
Bra022577.1-P	Field mustard	cytosol	29.63	13.71
Bra009283.1-P	Field mustard	cytosol, plastid	25.31	13.36
Bra012837.1-P	Field mustard	cytosol	17.9	13.18

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.2	EnsemblPlantsGene:Bra025558	EnsemblPlants:Bra025558.1	EnsemblPlants:Bra025558.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	UniProt:M4E9V2	PFAM:PF00240	PFscan:PS50053
PANTHER:PTHR10666	PANTHER:PTHR10666:SF91	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0002544EDD	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

AT5G40630 (E=5e-051) | ubiquitin family protein

Coordinates

chrA04:-:7877264..7878555

Molecular Weight (calculated)

17971.6 Da

IEP (calculated)

8.634

GRAVY (calculated)

-0.325

Length

162 amino acids

Sequence
(BLAST)

001: MGKLTAKRFC IGFVCGRSGT SNSNNKRSSS SLSSSSSSSL SCNNNNIKWE MRPGGMLVQK RSEDSNTEDL ISLKVSTVSQ LSYEISIDAN STFGELKMMI
101: AIVSGIEPIE QRLLFKGKER EDREYLHMIG VGDGDKVFLL QDPAFKELKL LRFSSPPNYC LI

Best Arabidopsis Sequence Match ( AT5G40630.1 )
(BLAST)

001: MGKLMAKRFC IGFGCGRIGT GNNKRSSSSS SSSSSFSSLS SSSSSSSSSC NNNNIKWEMR PGGMLVQKRS EDSNTEDLIS LRVSTVSQLS YEISIDANST
101: FGELKMMIAI VSGIEAKEQR LLFRGKERED REYLHMIGVG DGDKVFLLQD PAFKELKHIH LPITV

Arabidopsis Description

AT5G40630 protein [Source:UniProtKB/TrEMBL;Acc:Q9FM35]
SUBAcon: [cytosol,plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.