CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH63118

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55750.1	KRH63118	AT4G30825.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34589	Soybean	nucleus	93.02	93.02
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	64.91	63.29
GSMUA_Achr1P23430_001	Banana	cytosol	57.75	54.85
AT1G55750.1	Thale cress	cytosol	54.68	54.31
Solyc10g005900.2.1	Tomato	nucleus	56.22	54.28
AT3G61420.1	Thale cress	cytosol	53.32	54.06
CDY50309	Canola	cytosol	53.83	53.29
CDY54145	Canola	cytosol	53.49	53.04
Bra038317.1-P	Field mustard	cytosol, nucleus, plastid	50.09	52.69
TraesCS3B01G451500.2	Wheat	cytosol	49.74	48.67
HORVU7Hr1G071800.7	Barley	cytosol	49.57	48.5
TraesCS3A01G416500.3	Wheat	cytosol	49.23	48.17
TraesCS3D01G412100.3	Wheat	cytosol	48.72	48.15
EES13357	Sorghum	cytosol	49.06	48.0
TraesCS7B01G203000.1	Wheat	cytosol	48.38	47.49
TraesCS7D01G298200.1	Wheat	cytosol	48.21	47.48
TraesCS7A01G302900.1	Wheat	cytosol	38.33	47.27
Os08t0338200-01	Rice	cytosol	47.7	46.36
Zm00001d049563_P004	Maize	cytosol	46.68	44.92
HORVU3Hr1G092530.2	Barley	plastid	49.23	40.42
CDX95952	Canola	mitochondrion	5.11	30.93

Protein Annotations

EntrezGene:100776016	MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	EMBL:ACUP02012735	InterPro:BSD_dom
EnsemblPlantsGene:GLYMA_20G197500	GO:GO:0000439	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005675	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006289	GO:GO:0006351	GO:GO:0006360	GO:GO:0006366	GO:GO:0006464
GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0008353	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	GO:GO:0070816
UniProt:I1NHW6	InterPro:IPR005607	EnsemblPlants:KRG92196	ProteinID:KRG92196	ProteinID:KRG92196.1	PFAM:PF03909
PFscan:PS50858	PANTHER:PTHR12856	SMART:SM00751	SUPFAM:SSF140383	SUPFAM:SSF50729	InterPro:Tfb1/GTF2H1
UniParc:UPI000233DB91	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:43487613..43500332

Molecular Weight (calculated)

66855.0 Da

IEP (calculated)

8.605

GRAVY (calculated)

-0.589

Length

587 amino acids

Sequence
(BLAST)

001: MSSRQVVKRA KYKTTVKDPG TPGVLKLTQD KFVFKPNDPT SKTKLDVEFR FIQGHKVTKE GSKKPAWLNL IHSQGSYIFE LETFADLHVC RELVGVALNK
101: QVPGEATKVI SEEQLSPAEM ALKIKLLQED SKLQRLHKEL VASGKLTESE FWATKKKMLD QDESRKLKQQ IGFKNSLIFD TKPMSDGRIN QVKFQLTPEI
201: KYQIFALKPA VHQAFLNFVP RKMNEVDFWN KYFKAEYLHS TKNAVAAAAE AAEDEDLAVF LKDDEILEIE ARKKVRRVDP TLDMEADQGD DYTHLPDHGI
301: FRDGSKDISE AQNSLYKRTL LQDLNRQGAV VLEGKTLDME MEHPRTVAEI LARRKQECDG VVDEERQNRI SKMTLIDDLQ AQDNHPYAPL CIKDPRDYFD
401: FQQANAVKTL DDSQTGMEQM KCSLGSEEAY GSLRASISKI KTTGLRDPLF SPDVALKVLN GLTKNISSPK YHLGRSSQGS VLDILPNTTK ETLLDHWVCS
501: QELLRHFWSS YPITTQNLVN KTRRLKESIS QIYSKLEDIK VSAESDLRHH VSLVVHPMQQ ALNAALLHYE ADIRKRNARG QKPNGYV

Best Arabidopsis Sequence Match ( AT1G55750.1 )
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Arabidopsis Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.