CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68697
CDY28218

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55750.1	CDX68697	AT4G30825.1	20706207
AT1G55750.1	CDY28218	AT4G30825.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50309	Canola	cytosol	94.43	94.27
AT1G55750.1	Thale cress	cytosol	87.16	87.31
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	60.47	59.47
Solyc10g005900.2.1	Tomato	nucleus	55.91	54.44
KRH34589	Soybean	nucleus	53.38	53.83
GSMUA_Achr1P23430_001	Banana	cytosol	55.91	53.56
KRG92196	Soybean	nucleus	53.04	53.49
CDX95952	Canola	mitochondrion	7.94	48.45
TraesCS7B01G203000.1	Wheat	cytosol	48.65	48.16
TraesCS3D01G412100.3	Wheat	cytosol	48.31	48.15
TraesCS7D01G298200.1	Wheat	cytosol	48.31	47.99
HORVU7Hr1G071800.7	Barley	cytosol	48.48	47.83
TraesCS3B01G451500.2	Wheat	cytosol	48.48	47.83
TraesCS7A01G302900.1	Wheat	cytosol	38.34	47.69
TraesCS3A01G416500.3	Wheat	cytosol	48.14	47.5
EES13357	Sorghum	cytosol	47.64	47.0
Os08t0338200-01	Rice	cytosol	47.13	46.19
Zm00001d049563_P004	Maize	cytosol	45.61	44.26
HORVU3Hr1G092530.2	Barley	plastid	48.65	40.28

Protein Annotations

MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	GO:A0A078ISP3	UniProt:A0A078ISP3	InterPro:BSD_dom
EnsemblPlants:CDY54145	ProteinID:CDY54145	ProteinID:CDY54145.1	ncoils:Coil	GO:GO:0000439	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006351	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00013436001	InterPro:IPR005607	PFAM:PF03909	PFAM:PF08567	PFscan:PS50858	PANTHER:PTHR12856
SMART:SM00751	SUPFAM:SSF140383	SUPFAM:SSF50729	InterPro:TFIIH_BTF_p62_N	InterPro:Tfb1/GTF2H1	UniParc:UPI0004EB13D8
SEG:seg	:	:	:	:	:

Description

BnaCnng26250DBnaCnng26250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISP3]

Coordinates

chrLK033283:-:31799..36409

Molecular Weight (calculated)

67234.9 Da

IEP (calculated)

9.003

GRAVY (calculated)

-0.644

Length

592 amino acids

Sequence
(BLAST)

001: MSDWQVKYKS TVKDRGARGI LKLREGMLLF VPNDPNSDSK LKVLTPNIKS QKYTKEGSNK PPWLNLTNKQ ARSHIFEFEN YQDMHACRAL ITKALAKCEE
101: EPNKPAAVLT SAEQLSIADL ELRFKVLREN SELQRLHKEF VETKVLTEDE FWATRKKLLG KDSIRKSKQQ VGLKSMMVSG IKPSTDGRTN RVTFNLTSEI
201: IFQIFAEKPA VRQAFINYVP SKMTEKDFWT KYFRAEYLYS TKNTAVAAAE AAEDEELAVF LKPDEILAQE ARQKIRRVDP TLDMEADQGD DYTHLMDHGI
301: QRDGTMDVVE PQNGQFRRSL LQDLNRHAAV VLEGRNIDVD SEDTRSVAEA LARVKQVSKA DGETTKDANQ ERLARMSRVA EMEDLQAPQN FPLAPLSIKD
401: PRDYFESQQG NVVNEPRGAG TLKRNVHEAY GSLKESILEI RTKGLSDPLI KPEVAFEVFR SLTQTISTAK NIIGKNPRES FLDRLPKSTR DEVLHHWTSI
501: QELLKHFWSS YPITTTYLHT KAGKLKDAMS NSYSQLEAMK ESVQSELRHQ LSLLVRPMQQ ALDAAFQHYD ADLQRRAAKS ARGSAGEANG SV

Best Arabidopsis Sequence Match ( AT1G55750.1 )
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Arabidopsis Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.