CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55750.1	EES13584	AT4G30825.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049563_P004	Maize	cytosol	92.0	90.49
TraesCS3D01G412100.3	Wheat	cytosol	80.17	80.98
TraesCS3B01G451500.2	Wheat	cytosol	80.67	80.67
TraesCS7B01G203000.1	Wheat	cytosol	80.17	80.43
HORVU7Hr1G071800.7	Barley	cytosol	80.33	80.33
TraesCS7D01G298200.1	Wheat	cytosol	79.67	80.2
TraesCS3A01G416500.3	Wheat	cytosol	80.17	80.17
Os08t0338200-01	Rice	cytosol	79.17	78.64
TraesCS7A01G302900.1	Wheat	cytosol	62.33	78.57
HORVU3Hr1G092530.2	Barley	plastid	80.0	67.13
GSMUA_Achr1P23430_001	Banana	cytosol	61.67	59.87
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	58.83	58.64
Solyc10g005900.2.1	Tomato	nucleus	51.33	50.66
KRH34589	Soybean	nucleus	48.0	49.06
KRG92196	Soybean	nucleus	48.0	49.06
AT3G61420.1	Thale cress	cytosol	47.33	49.05
AT1G55750.1	Thale cress	cytosol	48.0	48.73
CDY50309	Canola	cytosol	47.17	47.72
CDY54145	Canola	cytosol	47.0	47.64
Bra038317.1-P	Field mustard	cytosol, nucleus, plastid	42.83	46.06
CDX95952	Canola	mitochondrion	5.17	31.96

Protein Annotations

MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	InterPro:BSD_dom	UniProt:C5YGW1	EnsemblPlants:EES13357
ProteinID:EES13357	ProteinID:EES13357.2	GO:GO:0000439	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006351	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005607	PFAM:PF03909
PFAM:PF08567	PFscan:PS50858	PANTHER:PTHR12856	SMART:SM00751	EnsemblPlantsGene:SORBI_3007G042900	SUPFAM:SSF140383
SUPFAM:SSF50729	InterPro:TFIIH_BTF_p62_N	InterPro:Tfb1/GTF2H1	UniParc:UPI00081AD83A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:4252861..4260698

Molecular Weight (calculated)

68060.0 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.678

Length

600 amino acids

Sequence
(BLAST)

001: MGSMTIGAKY KTTIKDPGTP GILRMNDDRF TFTPNDPRSA MKFNVDFRTI KGHKFNKVEG NKAALLNLSK EDKAGGYIFE FDNVGNRDLC RDFVARVLGK
101: HQGTVPPRPT VAPENSVASA ALEQLSVAEV ERRVKLLRED SELQKLHKKF VLGNILQESE FWATRKNLLD DEANKRSKQR AGFKNSLVDI KPTTDGRTNK
201: VTFQITPEMI HQIFAEKPAV RRAYLDYVPK KMVETRFWEK YCRAEYLFRT KNTAAATAEA AGDEELAIFL KNDDILAKEA KLKIKRVDPT LDMEADTGDD
301: YIHLPDHGIH RDGNKETIDA DSELARRTLS QDLNRHAAVV LEGRSLDVES TDPKTLAEAL ARSKKEPPST SIDDDANHER LVKVARMTEI EDLQAPRSLP
401: YAPLCIKDPR EYFDSQQANA LRSLGGSNDG RKARTCSLST EEAFHHLMDQ MSSIKVNKLN CPIIQSDMAL KVLNELNEGI SRSRRLNLKN PQEGLLGQLP
501: QHTRDELMDH WTAIQELLRH FWSSYPITSA VLYNKVQRVK EAMTQIYQKL QLIKESAQPD VRHEISRLVK PMTQALDAAF NHDLEQQQKS SKTGNRHNGF

Best Arabidopsis Sequence Match ( AT1G55750.1 )
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Arabidopsis Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.