Factsheet for VIT_19s0015g01390.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0013g02120.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55750.1	VIT_16s0013g02120.t01	AT4G30825.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P23430_001	Banana	cytosol	69.6	67.8
Solyc10g005900.2.1	Tomato	nucleus	68.44	67.76
KRH34589	Soybean	nucleus	63.62	65.25
KRG92196	Soybean	nucleus	63.29	64.91
AT3G61420.1	Thale cress	cytosol	59.63	62.0
AT1G55750.1	Thale cress	cytosol	60.47	61.59
TraesCS3B01G451500.2	Wheat	cytosol	60.63	60.83
HORVU7Hr1G071800.7	Barley	cytosol	60.47	60.67
CDY54145	Canola	cytosol	59.47	60.47
TraesCS3A01G416500.3	Wheat	cytosol	60.13	60.33
TraesCS3D01G412100.3	Wheat	cytosol	59.47	60.27
CDY50309	Canola	cytosol	59.3	60.2
TraesCS7B01G203000.1	Wheat	cytosol	59.8	60.2
TraesCS7D01G298200.1	Wheat	cytosol	59.3	59.9
TraesCS7A01G302900.1	Wheat	cytosol	47.01	59.45
EES13357	Sorghum	cytosol	58.64	58.83
Bra038317.1-P	Field mustard	cytosol, nucleus, plastid	53.82	58.06
Os08t0338200-01	Rice	cytosol	57.97	57.78
Zm00001d049563_P004	Maize	cytosol	56.48	55.74
HORVU3Hr1G092530.2	Barley	plastid	59.97	50.49
CDX95952	Canola	mitochondrion	6.48	40.21

Protein Annotations

EntrezGene:100249755	wikigene:100249755	MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	InterPro:BSD_dom
ProteinID:CBI39821	ProteinID:CBI39821.3	UniProt:D7UAQ6	EMBL:FN596747	GO:GO:0000439	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005675	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006289	GO:GO:0006351
GO:GO:0006360	GO:GO:0006366	GO:GO:0006464	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0008353	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0016787	GO:GO:0019538	GO:GO:0070816	InterPro:IPR005607	EntrezGene:LOC100249755	wikigene:LOC100249755
PFAM:PF03909	PFAM:PF08567	PFscan:PS50858	PANTHER:PTHR12856	SMART:SM00751	SUPFAM:SSF140383
SUPFAM:SSF50729	TIGR:TC55415	InterPro:TFIIH_BTF_p62_N	InterPro:Tfb1/GTF2H1	UniParc:UPI00015CBC7D	ArrayExpress:VIT_19s0015g01390
EnsemblPlantsGene:VIT_19s0015g01390	EnsemblPlants:VIT_19s0015g01390.t01	unigene:Vvi.12898	RefSeq:XP_002276057	RefSeq:XP_002276057.1	SEG:seg

Description

No Description!

Coordinates

chr19:-:9695254..9706077

Molecular Weight (calculated)

68356.2 Da

IEP (calculated)

7.454

GRAVY (calculated)

-0.558

Length

602 amino acids

Sequence
(BLAST)

001: MSGEVLKRAR YKTSVKDSGV AGVLKMTEDK FVFMPNDPTS SARFDVEFRF IKGHKFSKGG SNKPALLNLT QDSEKGGGYI FEFENYPDRE VCREFVGRAL
101: AKFSEASKAG SEQSAVKLFD EQLSTIEMER RIKLLREDSE LQKLHKQFVL SGVLTEAEFW ATRKKLLDGN TSRTSKQRVG FKSAMISDLK PLTDGRTNRV
201: TFNLTPEIIH QIFAEKPAVH QAFLNFVPNK MTEKDFWNKY CRAEYLHCTR NTVAAAAEAA EDEELAVFLK HDDILANEAR RKIRRVDPTL DMEADQGDDY
301: MHLPDHGIFR DGSKEIIDPQ YEQYRRTLSQ DLNRHAAVVL EGRPIDVELE DTRTVAEALA KSKRVEAANE KSDGSVTRER LERISRMTEI EDLQAPRDLP
401: FAALCIKDPR DYFDSQQANA LKTLGDTLAG SKQIKCSLST QEAYGSLRGF ISEIKSVGLS DPIVKPDIAL KVLNGLTQNI SSTKFHLGKN PQESVLDRLP
501: IITKEELLHH WTSIQELLRH FWSSYPITTT YLYTKASRLK DAMSQIYPKL QEIKESVQSD FRHQVSLLVQ PMLQALDAAF AHYDADQQKR SARSGERPNG
601: FV

Best Arabidopsis Sequence Match ( AT1G55750.1 )
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Arabidopsis Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.