Factsheet for TraesCS7A01G302900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G222100.1
TraesCS5B01G220900.1
TraesCS5D01G229900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55750.1	TraesCS5A01G222100.1	AT4G30825.1	20706207
AT1G55750.1	TraesCS5B01G220900.1	AT4G30825.1	20706207
AT1G55750.1	TraesCS5D01G229900.1	AT4G30825.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G203000.1	Wheat	cytosol	97.48	77.59
TraesCS7D01G298200.1	Wheat	cytosol	96.64	77.18
HORVU7Hr1G071800.7	Barley	cytosol	96.22	76.33
TraesCS3A01G416500.3	Wheat	cytosol	95.59	75.83
Os08t0338200-01	Rice	cytosol	80.04	63.08
EES13357	Sorghum	cytosol	78.57	62.33
Zm00001d049563_P004	Maize	cytosol	76.47	59.67
GSMUA_Achr1P23430_001	Banana	cytosol	64.08	49.35
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	59.45	47.01
AT3G61420.1	Thale cress	cytosol	48.53	39.9
Bra038317.1-P	Field mustard	cytosol, nucleus, plastid	46.22	39.43
Solyc10g005900.2.1	Tomato	nucleus	49.37	38.65
AT1G55750.1	Thale cress	cytosol	47.9	38.58
KRH34589	Soybean	nucleus	47.48	38.5
CDY50309	Canola	cytosol	47.9	38.45
CDY54145	Canola	cytosol	47.69	38.34
KRG92196	Soybean	nucleus	47.27	38.33
CDX95952	Canola	mitochondrion	1.47	7.22

Protein Annotations

MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	InterPro:BSD_dom	GO:GO:0000439	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006351	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005607	PFAM:PF03909	PFscan:PS50858	PANTHER:PTHR12856	SMART:SM00751	SUPFAM:SSF140383
InterPro:Tfb1/GTF2H1	EnsemblPlantsGene:TraesCS7A01G302900	EnsemblPlants:TraesCS7A01G302900.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7A:-:424926588..424933099

Molecular Weight (calculated)

53071.0 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.588

Length

476 amino acids

Sequence
(BLAST)

001: MGTMTIGAKY KATLKDRGTG GVLRMSEDKL TFTPNDPRSL MKLSVDFRTI KGHKFNKVDG SKPTPALLNL SKDSDKGGGY IFEFENVGNR DLCRDFVARV
101: LGKHQGTVPA RPNVPPEISA VSTGPEQLSS AEMERRMKLL REDSELQKLH KKFVLGNILQ ESEFWATRKN LLDDETNKAS KQKPSFKSAM LADVRPSADG
201: QTNKVTFSLT TEIIHQIFAE KPAVHRAFLD YVPKKLSEKD FWTKYCRAEY LLRTKNTLAA KAEAADDEEL AMFLKNDDIL AKEAKLKIKR VDPTLDMEAD
301: AGDDYIHLLD HGILRDGSRD TTDTDSELAR RTLSQDLNRH AAVVLEGRST DIESTDTKTV AEALARSKKE PPPSSVADDA SHERLVKVAR MTEIEDLQAP
401: RSLPYAPLCI KDPREYFDSQ QANALRPLGS NDGRKARSCS LSTDDTFCHL MDQISSVKMN CPVVQSDVAL KVSSFT

Best Arabidopsis Sequence Match ( AT1G55750.2 )
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHVS
501: PTFSSVLSDK KLYMY

Arabidopsis Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.