Factsheet for Solyc10g005900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g005950.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55750.1	Solyc07g005950.2.1	AT4G30825.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	67.76	68.44
GSMUA_Achr1P23430_001	Banana	cytosol	58.39	57.44
KRH34589	Soybean	nucleus	55.26	57.24
AT1G55750.1	Thale cress	cytosol	55.59	57.19
KRG92196	Soybean	nucleus	54.28	56.22
CDY50309	Canola	cytosol	54.61	55.99
AT3G61420.1	Thale cress	cytosol	53.29	55.96
CDY54145	Canola	cytosol	54.44	55.91
Bra038317.1-P	Field mustard	cytosol, nucleus, plastid	49.84	54.3
TraesCS3D01G412100.3	Wheat	cytosol	50.66	51.85
TraesCS3B01G451500.2	Wheat	cytosol	51.15	51.83
TraesCS3A01G416500.3	Wheat	cytosol	50.99	51.67
HORVU7Hr1G071800.7	Barley	cytosol	50.82	51.5
Os08t0338200-01	Rice	cytosol	51.15	51.49
EES13357	Sorghum	cytosol	50.66	51.33
TraesCS7B01G203000.1	Wheat	cytosol	50.33	51.17
TraesCS7D01G298200.1	Wheat	cytosol	50.0	51.01
TraesCS7A01G302900.1	Wheat	cytosol	38.65	49.37
Zm00001d049563_P004	Maize	cytosol	48.68	48.52
HORVU3Hr1G092530.2	Barley	plastid	51.15	43.5
CDX95952	Canola	mitochondrion	6.09	38.14

Protein Annotations

MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	InterPro:BSD_dom	GO:GO:0000439	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005675	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006289	GO:GO:0006351
GO:GO:0006360	GO:GO:0006366	GO:GO:0006464	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0008353	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0016787	GO:GO:0019538	GO:GO:0070816	InterPro:IPR005607	UniProt:K4CXC2	PFAM:PF03909
PFAM:PF08567	PFscan:PS50858	PANTHER:PTHR12856	SMART:SM00751	SUPFAM:SSF140383	SUPFAM:SSF50729
EnsemblPlantsGene:Solyc10g005900.2	EnsemblPlants:Solyc10g005900.2.1	InterPro:TFIIH_BTF_p62_N	InterPro:Tfb1/GTF2H1	UniParc:UPI000276CB75	SEG:seg

Description

No Description!

Coordinates

chr10:+:693359..702377

Molecular Weight (calculated)

68915.0 Da

IEP (calculated)

7.447

GRAVY (calculated)

-0.542

Length

608 amino acids

Sequence
(BLAST)

001: MLNSKYWSSM ADGKVVKRAK YKTSVKVPGV PGVLKLTKER FYFMPNDPTL TTKLNVEFKL IKGHKSSKEC SSKQALLNLT QAQGGNYLFE FDSFPDRDQC
101: RDFVASAIAA CGEIGKATSE KPAVPHDEQL SATEMGRRIK LLQENSELQN LHRELVIAGI LSETEFWAAR KKLLEQSENK KPKQRVALKN DMWSVKPLSD
201: GQTNRVTFNL TPEVIHQIFA EKPAVRQAYL KFVPGKMSEK EFWTKYSRAE YLHSTKNIVA AAAEAAEDEE LAVFLKQDDM LVSEARRKIR RVDPTLDMEA
301: DEGDDYMHLP DHGLPQGETK EILEPQYEPF KRSFSQYLNQ HAAVVLQGRV IDVELGDTRS VAEAFTRTNQ AEQATEVSDE NAYRERVKKV SRVAEIEDLQ
401: GPRDPPVALL SIKDPRDYFD SQQANAIKAL GDAETGIRQL KFRVSKEEAF CSLKDSISEI NSQGLIEPII SPEVALKVFN LLSQNISSTK YHLGKNPHES
501: VLDQLPSATK NELLLHWTSI QELLKHFWSS YPITTKYFYA KVTRLKDAMS QIYPKLQEIK ESVQSDVRHQ VSLLVQPMLQ ALDAAFAHYD ADLQKRSARS
601: GERPNGFV

Best Arabidopsis Sequence Match ( AT1G55750.1 )
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Arabidopsis Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.