Factsheet for Os08t0338200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os09t0423300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55750.1	Os09t0423300-01	AT4G30825.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G203000.1	Wheat	cytosol	82.12	82.94
HORVU7Hr1G071800.7	Barley	cytosol	82.28	82.83
TraesCS3B01G451500.2	Wheat	cytosol	82.28	82.83
TraesCS3D01G412100.3	Wheat	cytosol	81.29	82.66
TraesCS3A01G416500.3	Wheat	cytosol	81.95	82.5
TraesCS7D01G298200.1	Wheat	cytosol	81.13	82.21
TraesCS7A01G302900.1	Wheat	cytosol	63.08	80.04
EES13357	Sorghum	cytosol	78.64	79.17
Zm00001d049563_P004	Maize	cytosol	75.5	74.75
HORVU3Hr1G092530.2	Barley	plastid	81.79	69.09
GSMUA_Achr1P23430_001	Banana	cytosol	62.09	60.68
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	57.78	57.97
Solyc10g005900.2.1	Tomato	nucleus	51.49	51.15
AT3G61420.1	Thale cress	cytosol	46.36	48.36
CDY50309	Canola	cytosol	47.02	47.89
AT1G55750.1	Thale cress	cytosol	46.85	47.88
KRG92196	Soybean	nucleus	46.36	47.7
KRH34589	Soybean	nucleus	46.03	47.36
CDY54145	Canola	cytosol	46.19	47.13
Bra038317.1-P	Field mustard	cytosol, nucleus, plastid	42.88	46.42
CDX95952	Canola	mitochondrion	5.46	34.02

Protein Annotations

MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	EntrezGene:4345313	EMBL:AK068124	ProteinID:BAD03200.1
ProteinID:BAF23497.1	ProteinID:BAT04988.1	InterPro:BSD_dom	GO:GO:0000439	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005675
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006289	GO:GO:0006351	GO:GO:0006360
GO:GO:0006366	GO:GO:0006464	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0008353	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0016787
GO:GO:0019538	GO:GO:0070816	InterPro:IPR005607	EnsemblPlantsGene:Os08g0338200	EnsemblPlants:Os08t0338200-01	PFAM:PF03909
PFscan:PS50858	PANTHER:PTHR12856	UniProt:Q6ZC85	SMART:SM00751	SUPFAM:SSF140383	InterPro:Tfb1/GTF2H1
UniParc:UPI0000226051	RefSeq:XP_015650975.1	SEG:seg	:	:	:

Description

Kelch related domain containing protein. (Os08t0338200-01)

Coordinates

chr8:-:15203206..15211938

Molecular Weight (calculated)

68057.6 Da

IEP (calculated)

7.524

GRAVY (calculated)

-0.686

Length

604 amino acids

Sequence
(BLAST)

001: MGSMTIGAKY KTTLKDPGTT GVLRMNEDKF TFTPHDPRSA MKLNVDFRSI KGHKFNKVDG SKPAPPLLNL SKDSDKGGGY MFEFDNVTNR DLSRDFVAKV
101: LGKQQGTIPP KPNVPPENSV TSTGEEQLSA AEMQRRMKLL QEDSELQKLH MKFVLGNILQ ESEFWATRKN LLEDEANKGS KQRPGFKSAM LADVRPSADG
201: RTNKVTFSLT TEIIHQIFAE KPAVHRAFLD FVPKKMSEKD FWTKYFRAEY LLRTKNTVAA TAEAAEDEEL AIFLKNDDIL AKEARLKIKR VDPTLDMEAD
301: AGDDYIHLPD HGIIRDGSKE TIDNDGELAR RTLSQDLNRH AAVVLEGRSS DVELTDTKTV AEAIARSKKE PPSSSISDDT NHERLVKVAR MTEIEDLQAP
401: RSLPYAPLCI KDPREYFDSQ QANALRSLGG NNDGRHARNC RLSTDDAFDH LLGQISSIKV NGLNYPVIQS DVALKVLNEL NEGISRSRRL NLKNPQDSLL
501: GQIPRRTRDE LMDHWAAIQE LLQHFWSSYP ITTSVLYNKV QRIKDAMTQI YQKLQDIKES AQPDVRHEIS QLVKPMTQAL DAAFNHDLEQ QQKSSKSGNK
601: PNGF

Best Arabidopsis Sequence Match ( AT1G55750.1 )
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Arabidopsis Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.