Factsheet for GSMUA_Achr1P23430_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P04630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55750.1	GSMUA_Achr5P04630_001	AT4G30825.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	67.8	69.6
TraesCS3B01G451500.2	Wheat	cytosol	62.95	64.83
TraesCS3D01G412100.3	Wheat	cytosol	61.97	64.48
TraesCS7B01G203000.1	Wheat	cytosol	62.3	64.38
TraesCS3A01G416500.3	Wheat	cytosol	62.46	64.33
HORVU7Hr1G071800.7	Barley	cytosol	62.3	64.17
TraesCS7A01G302900.1	Wheat	cytosol	49.35	64.08
TraesCS7D01G298200.1	Wheat	cytosol	61.49	63.76
Os08t0338200-01	Rice	cytosol	60.68	62.09
EES13357	Sorghum	cytosol	59.87	61.67
Zm00001d049563_P004	Maize	cytosol	59.06	59.84
KRH34589	Soybean	nucleus	55.66	58.6
Solyc10g005900.2.1	Tomato	nucleus	57.44	58.39
KRG92196	Soybean	nucleus	54.85	57.75
AT1G55750.1	Thale cress	cytosol	55.02	57.53
AT3G61420.1	Thale cress	cytosol	53.72	57.34
CDY54145	Canola	cytosol	53.56	55.91
CDY50309	Canola	cytosol	53.24	55.48
Bra038317.1-P	Field mustard	cytosol, nucleus, plastid	48.54	53.76
HORVU3Hr1G092530.2	Barley	plastid	62.14	53.71
CDX95952	Canola	mitochondrion	5.5	35.05

Protein Annotations

MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	InterPro:BSD_dom	GO:GO:0000439	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006351	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr1G23430_001	EnsemblPlants:GSMUA_Achr1P23430_001	EnsemblPlants:GSMUA_Achr1T23430_001	InterPro:IPR005607	UniProt:M0S2F0	PFAM:PF03909
PFAM:PF08567	PFscan:PS50858	PANTHER:PTHR12856	SMART:SM00751	SUPFAM:SSF140383	SUPFAM:SSF50729
InterPro:TFIIH_BTF_p62_N	InterPro:Tfb1/GTF2H1	UniParc:UPI000294EABF	SEG:seg	:	:

Description

Putative General transcription factor IIH subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G23430_001]

Coordinates

chr1:+:17778769..17797236

Molecular Weight (calculated)

70183.3 Da

IEP (calculated)

6.805

GRAVY (calculated)

-0.549

Length

618 amino acids

Sequence
(BLAST)

001: MAAISKVAKY KTTVKEPGIP GVLNMMEDVF TFTPHDPRSA MKLRVDFRNI KGHKFSKDGS KQALLNLTQD SEKGGGYIFE FNNFTERNDC RDFVGKVLGK
101: FQALVSKQND EPTSEKSAVS LEQLSTIEME RRMKLLREDS ELQKLHKELV IGNVLTESEF WATRKNLLDD DSDRTLKQRT GFKSAMLADI RPSTDGRTNK
201: VTFSLTPEII HQIFAEKPAV HRAFLNFVPS KMTEKDFWTK YCRAEYLHRT KNSVAAAAEA AEDEELAVFL KHDDILADEA RRKIRRVDPT LDMEADLGDD
301: YIHLPDHGIL RDGSKETADS ENDLARRTLA QDVNRHAAVV LEGRALDIEL GDTRAVAEAL ARSKQESSAD TLDENSNLER QERVSRMTEI EDLQAPHSLP
401: YAPLCIKDPR EYFDSQQVNA LKALGGTGAG SKTIDYSLNS EEAYSYLMHQ ISEVKAQGLH NPIVQSEVAC KVLSGLTQQI SSTRYHLGKN PQESVLDRLP
501: KRTKDEIMLH WTSIQELLRH FWSSYPITTS YLYNKVLRLK SAMTDIYQKL KAIKDVQSDF RHQISLLVQP MLQALDAAFA HYDAEEHKHS KKNGAKPNGF
601: VHIILLFFSY NGYSTIYM

Best Arabidopsis Sequence Match ( AT1G55750.1 )
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Arabidopsis Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.