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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 4
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:extracellular, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:extracellular
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68697
CDY28218

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G55750.1 CDX68697 AT4G30825.1 20706207
AT1G55750.1 CDY28218 AT4G30825.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G55750.1 Thale cress cytosol 50.52 8.29
CDY50309 Canola cytosol 49.48 8.09
CDY54145 Canola cytosol 48.45 7.94
VIT_19s0015g01390.t01 Wine grape cytosol, mitochondrion, nucleus 40.21 6.48
Solyc10g005900.2.1 Tomato nucleus 38.14 6.09
TraesCS7D01G298200.1 Wheat cytosol 34.02 5.54
TraesCS7B01G203000.1 Wheat cytosol 34.02 5.52
GSMUA_Achr1P23430_001 Banana cytosol 35.05 5.5
HORVU7Hr1G071800.7 Barley cytosol 34.02 5.5
TraesCS3B01G451500.2 Wheat cytosol 34.02 5.5
TraesCS3A01G416500.3 Wheat cytosol 34.02 5.5
Os08t0338200-01 Rice cytosol 34.02 5.46
TraesCS3D01G412100.3 Wheat cytosol 31.96 5.22
EES13357 Sorghum cytosol 31.96 5.17
KRH34589 Soybean nucleus 30.93 5.11
KRG92196 Soybean nucleus 30.93 5.11
Zm00001d049563_P004 Maize cytosol 29.9 4.75
HORVU3Hr1G092530.2 Barley plastid 32.99 4.48
TraesCS7A01G302900.1 Wheat cytosol 7.22 1.47
Protein Annotations
EnsemblPlants:CDX95952EnsemblPlantsGene:GSBRNA2T00101969001ProteinID:CDX95952ProteinID:CDX95952.1SEG:segUniParc:UPI0004EDCC3E
MapMan:15.5.35:::::
Description
BnaA07g27790D
Coordinates
chrLK031892:-:237461..238275
Molecular Weight (calculated)
11537.3 Da
IEP (calculated)
10.076
GRAVY (calculated)
0.181
Length
97 amino acids
Sequence
(BLAST)
1: MLGKSSYPFV LGIRTLSSYL ITTTYLHSNV GKLKDAMSNT YSQLEAMKES VQFYLRHHVS LLVRPMQHVS FFQLYLLQVQ RERIVFYYIM SRFIYLV
Best Arabidopsis Sequence Match ( AT1G55750.1 )
(BLAST)
001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
Arabidopsis Description
TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.