Factsheet for AT1G55750.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G61420.1	Thale cress	cytosol	86.63	88.43
CDY54145	Canola	cytosol	87.31	87.16
CDY50309	Canola	cytosol	85.79	85.5
Bra038317.1-P	Field mustard	cytosol, nucleus, plastid	79.86	84.59
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	61.59	60.47
Solyc10g005900.2.1	Tomato	nucleus	57.19	55.59
KRH34589	Soybean	nucleus	54.82	55.2
GSMUA_Achr1P23430_001	Banana	cytosol	57.53	55.02
KRG92196	Soybean	nucleus	54.31	54.68
CDX95952	Canola	mitochondrion	8.29	50.52
TraesCS3B01G451500.2	Wheat	cytosol	49.92	49.17
TraesCS3D01G412100.3	Wheat	cytosol	49.41	49.16
HORVU7Hr1G071800.7	Barley	cytosol	49.75	49.0
TraesCS7B01G203000.1	Wheat	cytosol	49.58	49.0
TraesCS3A01G416500.3	Wheat	cytosol	49.58	48.83
TraesCS7D01G298200.1	Wheat	cytosol	49.24	48.83
EES13357	Sorghum	cytosol	48.73	48.0
TraesCS7A01G302900.1	Wheat	cytosol	38.58	47.9
Os08t0338200-01	Rice	cytosol	47.88	46.85
Zm00001d049563_P004	Maize	cytosol	46.87	45.41
HORVU3Hr1G092530.2	Barley	plastid	50.08	41.4

Protein Annotations

MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	EntrezGene:842024	ProteinID:AAF79503.1	ProteinID:AEE33293.1
EMBL:AK226523	ProteinID:ANM59713.1	ArrayExpress:AT1G55750	EnsemblPlantsGene:AT1G55750	RefSeq:AT1G55750	TAIR:AT1G55750
RefSeq:AT1G55750-TAIR-G	EnsemblPlants:AT1G55750.1	TAIR:AT1G55750.1	Unigene:At.42907	InterPro:BSD_dom	GO:GO:0000439
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005675	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006289
GO:GO:0006351	GO:GO:0006355	GO:GO:0006360	GO:GO:0006366	GO:GO:0006464	GO:GO:0006950
GO:GO:0006974	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0008353	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	GO:GO:0070816
InterPro:IPR005607	RefSeq:NP_001319242.1	RefSeq:NP_175971.3	PFAM:PF03909	PFAM:PF08567	PO:PO:0000293
PFscan:PS50858	PANTHER:PTHR12856	UniProt:Q3ECP0	SMART:SM00751	SUPFAM:SSF140383	SUPFAM:SSF50729
InterPro:TFIIH_BTF_p62_N	InterPro:Tfb1/GTF2H1	UniParc:UPI000034F4AB	SEG:seg	:	:

Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]

Coordinates

chr1:-:20840091..20845899

Molecular Weight (calculated)

67517.7 Da

IEP (calculated)

9.473

GRAVY (calculated)

-0.645

Length

591 amino acids

Sequence
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.