Factsheet for Bra038317.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011225.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55750.1	Bra011225.1-P	AT4G30825.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50309	Canola	cytosol	98.21	92.41
AT1G55750.1	Thale cress	cytosol	84.59	79.86
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	58.06	53.82
KRH34589	Soybean	nucleus	52.69	50.09
KRG92196	Soybean	nucleus	52.69	50.09
Solyc10g005900.2.1	Tomato	nucleus	54.3	49.84
GSMUA_Achr1P23430_001	Banana	cytosol	53.76	48.54
TraesCS7A01G302900.1	Wheat	cytosol	39.43	46.22
TraesCS3D01G412100.3	Wheat	cytosol	46.95	44.11
HORVU7Hr1G071800.7	Barley	cytosol	47.31	44.0
TraesCS3B01G451500.2	Wheat	cytosol	47.31	44.0
TraesCS7B01G203000.1	Wheat	cytosol	47.13	43.98
TraesCS7D01G298200.1	Wheat	cytosol	46.77	43.79
TraesCS3A01G416500.3	Wheat	cytosol	46.59	43.33
Os08t0338200-01	Rice	cytosol	46.42	42.88
EES13357	Sorghum	cytosol	46.06	42.83
Zm00001d049563_P004	Maize	cytosol	43.73	40.0
HORVU3Hr1G092530.2	Barley	plastid	47.49	37.06

Protein Annotations

MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	InterPro:BSD_dom	EnsemblPlantsGene:Bra038317	EnsemblPlants:Bra038317.1
EnsemblPlants:Bra038317.1-P	ncoils:Coil	GO:GO:0000439	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006351	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005607	UniProt:M4FB51
PFAM:PF03909	PFAM:PF08567	PFscan:PS50858	PANTHER:PTHR12856	SMART:SM00751	SUPFAM:SSF140383
SUPFAM:SSF50729	InterPro:TFIIH_BTF_p62_N	InterPro:Tfb1/GTF2H1	UniParc:UPI000254669A	SEG:seg	:

Description

AT1G55750 (E=8e-230) | transcription factor-related

Coordinates

chrA02:+:11314532..11318746

Molecular Weight (calculated)

63155.2 Da

IEP (calculated)

9.203

GRAVY (calculated)

-0.657

Length

558 amino acids

Sequence
(BLAST)

001: MSDWQVKYKS SLKDRGTEGI LKLREGMLLF VPNDPTSDSK LKVLTPNIKS QKYTKEGSKK PAWLNLSNKQ GDSHIFEFQN YQDMHACRAL ITKALAKCEE
101: EQPKKPAAVL TSAEQLSIAD LELRFKRLHK EFVETKVLTE DEFWATRKKL LGKDSIRKSK QQVGLKSMMV SGIKPSTDGR TNRVTFNLTS EIIFQIFAEK
201: PAVRQAFINY VPSKMTEKDF WTKYFRAEYL YSTKNTAVAA AEAAEDEELA VFLKPDEILA QEARQKIRRV DPTLDMEADQ GDDYTHLMDH GIQRDGTMDV
301: VEPQNGQFRR SLLQDLNRHA AVVLEGRNID VDSENTRSVA EALARVKQVS KADGETTKDA NQERLARMSR LAEMEDLQAP QNFPLAPLSI KDPRDYFESQ
401: QGNVVNEPRG AGTLKRNVHE AYGSLKESIL EIRTKGLRDP LIKPEVAFEV FRSLTQTIST AKNIIGKNPR ESFLDRLPKS TRDEVLHVGK LKDAMSNSYS
501: QLEAMKESVQ SELRHQLSLL VRPMQQALDA AFQHYDADLQ RRTAKSARGS AGEANGSV

Best Arabidopsis Sequence Match ( AT1G55750.1 )
(BLAST)

001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Arabidopsis Description

TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.