Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d024409_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55750.1 | Zm00001d024409_P001 | AT4G30825.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13357 | Sorghum | cytosol | 90.49 | 92.0 |
| TraesCS3D01G412100.3 | Wheat | cytosol | 77.05 | 79.12 |
| TraesCS7B01G203000.1 | Wheat | cytosol | 77.38 | 78.93 |
| TraesCS3B01G451500.2 | Wheat | cytosol | 77.38 | 78.67 |
| HORVU7Hr1G071800.7 | Barley | cytosol | 77.21 | 78.5 |
| TraesCS7D01G298200.1 | Wheat | cytosol | 76.56 | 78.36 |
| TraesCS3A01G416500.3 | Wheat | cytosol | 77.05 | 78.33 |
| TraesCS7A01G302900.1 | Wheat | cytosol | 59.67 | 76.47 |
| Os08t0338200-01 | Rice | cytosol | 74.75 | 75.5 |
| HORVU3Hr1G092530.2 | Barley | plastid | 76.72 | 65.45 |
| GSMUA_Achr1P23430_001 | Banana | cytosol | 59.84 | 59.06 |
| VIT_19s0015g01390.t01 | Wine grape | cytosol, mitochondrion, nucleus | 55.74 | 56.48 |
| Solyc10g005900.2.1 | Tomato | nucleus | 48.52 | 48.68 |
| AT1G55750.1 | Thale cress | cytosol | 45.41 | 46.87 |
| KRH34589 | Soybean | nucleus | 45.08 | 46.85 |
| KRG92196 | Soybean | nucleus | 44.92 | 46.68 |
| AT3G61420.1 | Thale cress | cytosol | 44.1 | 46.46 |
| CDY54145 | Canola | cytosol | 44.26 | 45.61 |
| CDY50309 | Canola | cytosol | 44.26 | 45.53 |
| Bra038317.1-P | Field mustard | cytosol, nucleus, plastid | 40.0 | 43.73 |
| CDX95952 | Canola | mitochondrion | 4.75 | 29.9 |
Protein Annotations
| EntrezGene:100193949 | MapMan:14.6.3.2.4 | MapMan:15.3.5.6.1.4 | MapMan:15.5.35 | UniProt:A0A1D6PW72 | ProteinID:AQK50809.1 |
| InterPro:BSD_dom | GO:GO:0000439 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006351 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005607 | PFAM:PF03909 | PFscan:PS50858 |
| SMART:SM00751 | SUPFAM:SSF140383 | UniParc:UPI000843A4F5 | EnsemblPlantsGene:Zm00001d049563 | EnsemblPlants:Zm00001d049563_P004 | EnsemblPlants:Zm00001d049563_T004 |
| SEG:seg | : | : | : | : | : |
Description
BSD-transcription factor 3Probable RNA polymerase II transcription factor B subunit 1-1
Coordinates
chr4:-:35300551..35308212
Molecular Weight (calculated)
69187.7 Da
IEP (calculated)
8.627
GRAVY (calculated)
-0.565
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSMTIGAKY KTTIKDPGTP GILRMNGDRF TFTPNDPRSA MKFNVDFRTI KGMRSLSSLE AGGYIFEFDN VGNRDQCRDF VARVLGKHQG IVPPRPTVAP
101: ENSVASAALE QLSAAEVERR VKLLREDSEL QKLHKKFVLG NILQESEFWA TRKNLLDDEA NKRSKQKPGF KSALVDIRPT TDGRTNKVTF QITPEMIHQV
201: LNSMILYLMY FQLVNTIYPI LQIFAEKPAV RRAYLDFVPK KMSETRFWEK YCRAEYLVRT KNTAAATAEA AGDEELAIFL KNDDILAKEA KLKIKRVDPT
301: LDMEADTGDD YIHLPDHGIH RDGSKETVDA DSELARRTLS QDLNRHAAVV LEGRSLDVES TDPKTLAEAL ARSKKEPPST SNVDDDNHER LMKVARMTEI
401: EDLQAPRSLL YAPLCIKDPR EYFDSQQANA LRSLGGSNGG RKAHSCSLST EEVFHHLMDQ MSSVKVNRLN CPIVQSDMAL KVLNELNEGI SRSRRLNLKN
501: PQEGLLGQLP QHTRDELMDH WTAIQELLRH FWSSYPITSA VLYNKVQRVK EAMTQIYQKL QLIKELAQPD VRHEISRLVK PMTQALDAAF NHDLEQQQKS
601: SKAGNRHNGF
101: ENSVASAALE QLSAAEVERR VKLLREDSEL QKLHKKFVLG NILQESEFWA TRKNLLDDEA NKRSKQKPGF KSALVDIRPT TDGRTNKVTF QITPEMIHQV
201: LNSMILYLMY FQLVNTIYPI LQIFAEKPAV RRAYLDFVPK KMSETRFWEK YCRAEYLVRT KNTAAATAEA AGDEELAIFL KNDDILAKEA KLKIKRVDPT
301: LDMEADTGDD YIHLPDHGIH RDGSKETVDA DSELARRTLS QDLNRHAAVV LEGRSLDVES TDPKTLAEAL ARSKKEPPST SNVDDDNHER LMKVARMTEI
401: EDLQAPRSLL YAPLCIKDPR EYFDSQQANA LRSLGGSNGG RKAHSCSLST EEVFHHLMDQ MSSVKVNRLN CPIVQSDMAL KVLNELNEGI SRSRRLNLKN
501: PQEGLLGQLP QHTRDELMDH WTAIQELLRH FWSSYPITSA VLYNKVQRVK EAMTQIYQKL QLIKELAQPD VRHEISRLVK PMTQALDAAF NHDLEQQQKS
601: SKAGNRHNGF
001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
Arabidopsis Description
TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.