Factsheet for AT3G61420.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G55750.1	Thale cress	cytosol	88.43	86.63
VIT_19s0015g01390.t01	Wine grape	cytosol, mitochondrion, nucleus	62.0	59.63
GSMUA_Achr1P23430_001	Banana	cytosol	57.34	53.72
KRH34589	Soybean	nucleus	54.4	53.66
KRG92196	Soybean	nucleus	54.06	53.32
Solyc10g005900.2.1	Tomato	nucleus	55.96	53.29
TraesCS3D01G412100.3	Wheat	cytosol	50.6	49.33
TraesCS3B01G451500.2	Wheat	cytosol	50.95	49.17
TraesCS3A01G416500.3	Wheat	cytosol	50.6	48.83
HORVU7Hr1G071800.7	Barley	cytosol	50.43	48.67
TraesCS7B01G203000.1	Wheat	cytosol	50.26	48.66
TraesCS7A01G302900.1	Wheat	cytosol	39.9	48.53
TraesCS7D01G298200.1	Wheat	cytosol	49.91	48.49
EES13357	Sorghum	cytosol	49.05	47.33
Os08t0338200-01	Rice	cytosol	48.36	46.36
Zm00001d049563_P004	Maize	cytosol	46.46	44.1
HORVU3Hr1G092530.2	Barley	plastid	50.78	41.12

Protein Annotations

MapMan:14.6.3.2.4	MapMan:15.3.5.6.1.4	MapMan:15.5.35	EntrezGene:825315	ProteinID:AEE80200.1	EMBL:AK176589
ProteinID:ANM64344.1	ArrayExpress:AT3G61420	EnsemblPlantsGene:AT3G61420	RefSeq:AT3G61420	TAIR:AT3G61420	RefSeq:AT3G61420-TAIR-G
EnsemblPlants:AT3G61420.1	TAIR:AT3G61420.1	InterPro:BSD_dom	EMBL:BT021122	ProteinID:CAB71072.1	GO:GO:0000439
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005675	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006289
GO:GO:0006351	GO:GO:0006355	GO:GO:0006360	GO:GO:0006366	GO:GO:0006464	GO:GO:0006950
GO:GO:0006974	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0008353	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	GO:GO:0070816
InterPro:IPR005607	RefSeq:NP_001326379.1	RefSeq:NP_191701.4	PFAM:PF03909	PFAM:PF08567	PO:PO:0000293
PFscan:PS50858	PANTHER:PTHR12856	UniProt:Q9M322	SMART:SM00751	SUPFAM:SSF140383	SUPFAM:SSF50729
InterPro:TFIIH_BTF_p62_N	InterPro:Tfb1/GTF2H1	UniParc:UPI0001A7B0A8	SEG:seg	:	:

Description

TFB1-3Probable RNA polymerase II transcription factor B subunit 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M322]

Coordinates

chr3:-:22726708..22732152

Molecular Weight (calculated)

66389.4 Da

IEP (calculated)

8.640

GRAVY (calculated)

-0.618

Length

579 amino acids

Sequence
(BLAST)

001: MEKRVKYKSF VKDPGTLGSL ELSEVMLLFV PNDPKSDLKL KVQTHNIKSQ KYTKEGSNKP PWLNLTSKQG RSHIFEFENY PDMHACRDFI TKALAKCEEE
101: PNKLVVLTPA EQLSMAEFEL RFKLLRENSE LQKLHKQFVE SKVLTEDEFW STRKKLLGKD SIRKSKQQMG LKSMMVSGIK PSTDGRTNRV TFNLTSEIIF
201: QIFAEKPAVR QAFINYVPKK MTEKDFWTKY FRAEYLYSTK NTAVAAAEAA EDEELAVFLK PDEILAQEAR QKMRRVDPTL DMDADEGDDY THLMDHGIQR
301: DGTNDIIEPQ NDQLKRSLLQ DLNRHAAVVL EGRCINVQSE DTRIVAEALT RAKQVSKADG EITKDANQER LERMSRATEM EDLQAPQNFP LAPLSIKDPR
401: DYFESQQGNI LSEPRGAKAS KRNVHEAYGL LKESILVIRM TGLSDPLIKP EVSFEVFSSL TRTISTAKNI LGKNPQESFL DRLPKSTKDE VIHHWTSIQE
501: LVRHFWSSYP ITTTYLSTKV GKLKDAMSNT YSLLDAMKQS VQSDLRHQVS LLVRPMQQAL DAAFQHYESD LQRRTAKIT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.