Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G222100.1 | |
| TraesCS5B01G220900.1 | |
| TraesCS5D01G229900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55750.1 | TraesCS5A01G222100.1 | AT4G30825.1 | 20706207 |
| AT1G55750.1 | TraesCS5B01G220900.1 | AT4G30825.1 | 20706207 |
| AT1G55750.1 | TraesCS5D01G229900.1 | AT4G30825.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G203000.1 | Wheat | cytosol | 97.65 | 97.32 |
| TraesCS7A01G302900.1 | Wheat | cytosol | 77.18 | 96.64 |
| HORVU7Hr1G071800.7 | Barley | cytosol | 95.64 | 95.0 |
| TraesCS3D01G412100.3 | Wheat | cytosol | 93.96 | 94.28 |
| Os08t0338200-01 | Rice | cytosol | 82.21 | 81.13 |
| EES13357 | Sorghum | cytosol | 80.2 | 79.67 |
| Zm00001d049563_P004 | Maize | cytosol | 78.36 | 76.56 |
| GSMUA_Achr1P23430_001 | Banana | cytosol | 63.76 | 61.49 |
| VIT_19s0015g01390.t01 | Wine grape | cytosol, mitochondrion, nucleus | 59.9 | 59.3 |
| Solyc10g005900.2.1 | Tomato | nucleus | 51.01 | 50.0 |
| AT3G61420.1 | Thale cress | cytosol | 48.49 | 49.91 |
| AT1G55750.1 | Thale cress | cytosol | 48.83 | 49.24 |
| CDY50309 | Canola | cytosol | 48.32 | 48.57 |
| KRH34589 | Soybean | nucleus | 47.65 | 48.38 |
| CDY54145 | Canola | cytosol | 47.99 | 48.31 |
| KRG92196 | Soybean | nucleus | 47.48 | 48.21 |
| Bra038317.1-P | Field mustard | cytosol, nucleus, plastid | 43.79 | 46.77 |
| CDX95952 | Canola | mitochondrion | 5.54 | 34.02 |
Protein Annotations
| MapMan:14.6.3.2.4 | MapMan:15.3.5.6.1.4 | MapMan:15.5.35 | InterPro:BSD_dom | ncoils:Coil | GO:GO:0000439 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006289 | GO:GO:0006351 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR005607 | PFAM:PF03909 | PFscan:PS50858 | PANTHER:PTHR12856 | SMART:SM00751 |
| SUPFAM:SSF140383 | InterPro:Tfb1/GTF2H1 | EnsemblPlantsGene:TraesCS7D01G298200 | EnsemblPlants:TraesCS7D01G298200.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr7D:-:377605524..377615165
Molecular Weight (calculated)
67137.9 Da
IEP (calculated)
8.446
GRAVY (calculated)
-0.644
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTMTIGAKY KATLKDRGTG GVLRMSEDKL TFTPNDQRSL MKLSVDFRTI KGHKFNKVDG SKSPALLNLS KDSDKGGGYI FEFENVANRD LCRDFVARVL
101: GKHQGTVPAR PNVPPEISAV STGPEQLSSA EMERRMKLLR EDSELQKLHK KFVLGNILQE EFWATRKNLL DDETNKASKQ KPGFKSAMLA DVRPSADGQT
201: NKVTFSLTTE IIYQIFAEKP AVHRAFLDYV PKKLSEKDFW TKYCRAEYLL RTKNTLAAKA EAADDEELAM FLKNDDILAK EAKLKIKRVD PTLDMEADAG
301: DDYIHLPDHG ILRDGSRETT DIDSELARRT LSQDLNRHAA VVLEGRSTDI ESTDTKTLAE ALARSKKEPP PSSVADDASH ERLVKVARMT EIEDLQAPRS
401: LPYAPLCIKD PREYFDSQQA NALRPLGSND GRKARSCSLS TDDAFRHLMD QISSVKMNCP VVQSDVALKV LNELSEGISR SWRLNLKNPQ DSLLGRRPHR
501: TRDELMDHWT AIQELLCHFW SSYPMTTTVL CNKVQRLKDA MTQIYQKLQD IKESAQPDVR HEISQLVKPM TQALDAAFNH EQQQKSSKAG SKPNGF
101: GKHQGTVPAR PNVPPEISAV STGPEQLSSA EMERRMKLLR EDSELQKLHK KFVLGNILQE EFWATRKNLL DDETNKASKQ KPGFKSAMLA DVRPSADGQT
201: NKVTFSLTTE IIYQIFAEKP AVHRAFLDYV PKKLSEKDFW TKYCRAEYLL RTKNTLAAKA EAADDEELAM FLKNDDILAK EAKLKIKRVD PTLDMEADAG
301: DDYIHLPDHG ILRDGSRETT DIDSELARRT LSQDLNRHAA VVLEGRSTDI ESTDTKTLAE ALARSKKEPP PSSVADDASH ERLVKVARMT EIEDLQAPRS
401: LPYAPLCIKD PREYFDSQQA NALRPLGSND GRKARSCSLS TDDAFRHLMD QISSVKMNCP VVQSDVALKV LNELSEGISR SWRLNLKNPQ DSLLGRRPHR
501: TRDELMDHWT AIQELLCHFW SSYPMTTTVL CNKVQRLKDA MTQIYQKLQD IKESAQPDVR HEISQLVKPM TQALDAAFNH EQQQKSSKAG SKPNGF
001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
Arabidopsis Description
TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.