Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G222100.1 | |
| TraesCS5B01G220900.1 | |
| TraesCS5D01G229900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55750.1 | TraesCS5A01G222100.1 | AT4G30825.1 | 20706207 |
| AT1G55750.1 | TraesCS5B01G220900.1 | AT4G30825.1 | 20706207 |
| AT1G55750.1 | TraesCS5D01G229900.1 | AT4G30825.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G416500.3 | Wheat | cytosol | 98.65 | 97.67 |
| TraesCS3B01G451500.2 | Wheat | cytosol | 98.15 | 97.17 |
| HORVU7Hr1G071800.7 | Barley | cytosol | 95.12 | 94.17 |
| TraesCS7D01G298200.1 | Wheat | cytosol | 94.28 | 93.96 |
| Os08t0338200-01 | Rice | cytosol | 82.66 | 81.29 |
| EES13357 | Sorghum | cytosol | 80.98 | 80.17 |
| Zm00001d049563_P004 | Maize | cytosol | 79.12 | 77.05 |
| GSMUA_Achr1P23430_001 | Banana | cytosol | 64.48 | 61.97 |
| VIT_19s0015g01390.t01 | Wine grape | cytosol, mitochondrion, nucleus | 60.27 | 59.47 |
| Solyc10g005900.2.1 | Tomato | nucleus | 51.85 | 50.66 |
| AT3G61420.1 | Thale cress | cytosol | 49.33 | 50.6 |
| AT1G55750.1 | Thale cress | cytosol | 49.16 | 49.41 |
| KRG92196 | Soybean | nucleus | 48.15 | 48.72 |
| CDY50309 | Canola | cytosol | 48.48 | 48.57 |
| KRH34589 | Soybean | nucleus | 47.81 | 48.38 |
| CDY54145 | Canola | cytosol | 48.15 | 48.31 |
| Bra038317.1-P | Field mustard | cytosol, nucleus, plastid | 44.11 | 46.95 |
| CDX95952 | Canola | mitochondrion | 5.22 | 31.96 |
Protein Annotations
| MapMan:14.6.3.2.4 | MapMan:15.3.5.6.1.4 | MapMan:15.5.35 | InterPro:BSD_dom | ncoils:Coil | GO:GO:0000439 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006289 | GO:GO:0006351 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR005607 | PFAM:PF03909 | PFscan:PS50858 | PANTHER:PTHR12856 | SMART:SM00751 |
| SUPFAM:SSF140383 | InterPro:Tfb1/GTF2H1 | EnsemblPlantsGene:TraesCS3D01G412100 | EnsemblPlants:TraesCS3D01G412100.3 | SEG:seg | : |
Description
No Description!
Coordinates
chr3D:+:524707420..524717058
Molecular Weight (calculated)
66821.5 Da
IEP (calculated)
8.634
GRAVY (calculated)
-0.654
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTMTIGAKY KTTLKDPGHG GVLRMSEDKL IFTPNDPRSL MKLNVDFRSI KGHKFNKVDG SKPTPPLLNL SKDSDKGGGY IFEFDNVGNR DLCRDFVARV
101: LGKHQGTVPA RTNVPSEKSA VSTGPEQLSS AEMERRMKLL REDSELQKLH KKFVLGNILQ ESEFWATRKN LLDDETNKAS KQKPGFKSAM LADVRPSADG
201: QTNKVTFSLT TEIIHQIFAE KPAVHRAFLD YVPKKLSEKD FWTKYCRAEY LLRTKNTLAA KAEAADDEEL AMFLKNDDIL AKEAKLKIKR VDPTLDMEAD
301: AGDDYIHLPD HGILRDGSRE TADIDSELAR RTLSQDLNRH AAVVLEGRST DIESTDTKTV AEALARSKKE PPPSSAADDA SHERLVKVAR MTEIEDLQAP
401: RSLPYAPLCI KDPREYFDSQ QANALRPLGS NDGRKARSCS LSTDDAFRHL MDQISSVKMN CPVVQSDVAL KVLNELNEGI SRSRRLNLKN PQDSLLGRLP
501: HRTRDELMDH WTAIQELLRH FWSSYPITTA VLSNKVQRLK EAMTQIYQKL QDIKESAQPD VRHEISQLVK PMTQALDAAF YHDQQQKSSK AGTL
101: LGKHQGTVPA RTNVPSEKSA VSTGPEQLSS AEMERRMKLL REDSELQKLH KKFVLGNILQ ESEFWATRKN LLDDETNKAS KQKPGFKSAM LADVRPSADG
201: QTNKVTFSLT TEIIHQIFAE KPAVHRAFLD YVPKKLSEKD FWTKYCRAEY LLRTKNTLAA KAEAADDEEL AMFLKNDDIL AKEAKLKIKR VDPTLDMEAD
301: AGDDYIHLPD HGILRDGSRE TADIDSELAR RTLSQDLNRH AAVVLEGRST DIESTDTKTV AEALARSKKE PPPSSAADDA SHERLVKVAR MTEIEDLQAP
401: RSLPYAPLCI KDPREYFDSQ QANALRPLGS NDGRKARSCS LSTDDAFRHL MDQISSVKMN CPVVQSDVAL KVLNELNEGI SRSRRLNLKN PQDSLLGRLP
501: HRTRDELMDH WTAIQELLRH FWSSYPITTA VLSNKVQRLK EAMTQIYQKL QDIKESAQPD VRHEISQLVK PMTQALDAAF YHDQQQKSSK AGTL
001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
Arabidopsis Description
TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.