Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G064130.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55750.1 | HORVU5Hr1G064130.1 | AT4G30825.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G071800.7 | Barley | cytosol | 80.0 | 95.33 |
| Os08t0338200-01 | Rice | cytosol | 69.09 | 81.79 |
| EES13357 | Sorghum | cytosol | 67.13 | 80.0 |
| Zm00001d049563_P004 | Maize | cytosol | 65.45 | 76.72 |
| GSMUA_Achr1P23430_001 | Banana | cytosol | 53.71 | 62.14 |
| VIT_19s0015g01390.t01 | Wine grape | cytosol, mitochondrion, nucleus | 50.49 | 59.97 |
| Solyc10g005900.2.1 | Tomato | nucleus | 43.5 | 51.15 |
| AT3G61420.1 | Thale cress | cytosol | 41.12 | 50.78 |
| AT1G55750.1 | Thale cress | cytosol | 41.4 | 50.08 |
| CDY50309 | Canola | cytosol | 40.84 | 49.24 |
| KRG92196 | Soybean | nucleus | 40.42 | 49.23 |
| KRH34589 | Soybean | nucleus | 40.0 | 48.72 |
| CDY54145 | Canola | cytosol | 40.28 | 48.65 |
| Bra038317.1-P | Field mustard | cytosol, nucleus, plastid | 37.06 | 47.49 |
| CDX95952 | Canola | mitochondrion | 4.48 | 32.99 |
Protein Annotations
| MapMan:14.6.3.2.4 | MapMan:15.3.5.6.1.4 | MapMan:15.5.35 | UniProt:A0A287MAD2 | InterPro:BSD_dom | ncoils:Coil |
| GO:GO:0000439 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006351 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU3Hr1G092530 | EnsemblPlants:HORVU3Hr1G092530.2 | InterPro:IPR005607 | PFAM:PF03909 |
| PFscan:PS50858 | PANTHER:PTHR12856 | SMART:SM00751 | SUPFAM:SSF140383 | InterPro:Tfb1/GTF2H1 | UniParc:UPI000B4699AE |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:638546620..638557028
Molecular Weight (calculated)
79635.7 Da
IEP (calculated)
8.762
GRAVY (calculated)
-0.668
Length
715 amino acids
Sequence
(BLAST)
(BLAST)
001: HRLPTRSPGL LFPSPFLPRS DRRAPPPPQS KSLPVPESQL PAASRVPPLQ RLQPPSARAK PPFQLDIDTN PIGAGAGDAR RPDGCHFPEV GGRTPVQVAA
101: SPSPCAVESE EEEEAMGTMT IGAKYKTTLK DPGHGGVLRM SEDKLIFTPN DPRSLMKLSV DFRSIKGHKF NKVDGSKPTP PLLNLSKVSD KGGGYIFEFD
201: NVGNRDLCRD FVARVLGKHQ GTVPARPNVP PEKLAVSTGP EQLSSAEMER RMKLLREDSE LQKLHKKFVL GNILQESEFW ATRKNLLDDE TNKSSKQKPG
301: FKSAMLADVR PSADGQTNKV TFSLTTEIIH QIFAEKPAVH RAFLDYVPKK LSEKDFWTKY CRAEYLLRTK NTLAAKAEAA DDEELAMFLK NDDILAKEAK
401: LKIKRVDPTL DMEADAGDDY IHLPDHGILR DGSRETTDTD SELARRTLSQ DLNRHAAVVL EGRSTDIEST DTKTVAEALA RSKKEPPPSS VADDASHERL
501: VKAARMTELE DLQAPRSLPY APLCIKDPRE YFDSQQANAL RPLGNNDGRK ARSCSLSADD AFRHLMDQIS SVKMNCPVVQ ADVALKVLNE LNEGISRSRR
601: LNLKNPQDSL LGRLPHRTRD ELMDHWTAIQ ELLRHFWSSY PITTAVLSNK VQRLKEAMTQ IYQKLQDIKE SAQPDVRHEI SQLVKPMTQA LDAAFYHDQQ
701: QKSSKSGTGS KPNGF
101: SPSPCAVESE EEEEAMGTMT IGAKYKTTLK DPGHGGVLRM SEDKLIFTPN DPRSLMKLSV DFRSIKGHKF NKVDGSKPTP PLLNLSKVSD KGGGYIFEFD
201: NVGNRDLCRD FVARVLGKHQ GTVPARPNVP PEKLAVSTGP EQLSSAEMER RMKLLREDSE LQKLHKKFVL GNILQESEFW ATRKNLLDDE TNKSSKQKPG
301: FKSAMLADVR PSADGQTNKV TFSLTTEIIH QIFAEKPAVH RAFLDYVPKK LSEKDFWTKY CRAEYLLRTK NTLAAKAEAA DDEELAMFLK NDDILAKEAK
401: LKIKRVDPTL DMEADAGDDY IHLPDHGILR DGSRETTDTD SELARRTLSQ DLNRHAAVVL EGRSTDIEST DTKTVAEALA RSKKEPPPSS VADDASHERL
501: VKAARMTELE DLQAPRSLPY APLCIKDPRE YFDSQQANAL RPLGNNDGRK ARSCSLSADD AFRHLMDQIS SVKMNCPVVQ ADVALKVLNE LNEGISRSRR
601: LNLKNPQDSL LGRLPHRTRD ELMDHWTAIQ ELLRHFWSSY PITTAVLSNK VQRLKEAMTQ IYQKLQDIKE SAQPDVRHEI SQLVKPMTQA LDAAFYHDQQ
701: QKSSKSGTGS KPNGF
001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
Arabidopsis Description
TFB1-1Probable RNA polymerase II transcription factor B subunit 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECP0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.