Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU1Hr1G086590.2 | |
HORVU3Hr1G062030.1 | |
HORVU3Hr1G073200.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G60210.1 | HORVU1Hr1G086590.2 | AT1G52240.1 | 21798944 |
AT3G60210.1 | HORVU3Hr1G062030.1 | AT1G52240.1 | 21798944 |
AT3G60210.1 | HORVU3Hr1G073200.1 | AT1G52240.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1A01G214600.1 | Wheat | plastid | 95.62 | 94.93 |
HORVU6Hr1G016500.1 | Barley | plastid | 75.18 | 94.5 |
TraesCS1B01G228500.1 | Wheat | plastid | 95.62 | 94.24 |
TraesCS1D01G217600.1 | Wheat | plastid | 94.89 | 92.86 |
Os10t0566700-00 | Rice | plastid | 83.21 | 81.43 |
EER94466 | Sorghum | plastid | 72.26 | 73.88 |
Zm00001d047067_P001 | Maize | plastid | 73.72 | 73.72 |
Zm00001d029997_P002 | Maize | plastid | 70.07 | 71.64 |
Zm00001d002408_P002 | Maize | plastid | 69.34 | 70.9 |
GSMUA_Achr11P... | Banana | plastid | 66.42 | 63.64 |
GSMUA_Achr2P18220_001 | Banana | plastid | 62.77 | 61.43 |
Solyc01g088610.2.1 | Tomato | plastid | 59.85 | 60.74 |
PGSC0003DMT400004324 | Potato | plastid | 59.85 | 60.74 |
CDY48244 | Canola | cytosol, plastid | 46.72 | 59.81 |
AT3G60210.1 | Thale cress | plastid | 58.39 | 57.97 |
KRH66392 | Soybean | plastid | 56.2 | 57.46 |
KRH48902 | Soybean | plastid | 56.2 | 57.46 |
CDY23449 | Canola | plastid | 52.55 | 51.8 |
AT2G44650.1 | Thale cress | plastid | 52.55 | 51.8 |
CDY30480 | Canola | plastid | 51.09 | 50.36 |
Bra037640.1-P | Field mustard | plastid | 51.09 | 50.36 |
Bra004853.1-P | Field mustard | plastid | 51.09 | 50.36 |
HORVU3Hr1G111860.1 | Barley | plastid | 37.23 | 47.22 |
VIT_15s0021g00830.t01 | Wine grape | plastid | 50.37 | 45.39 |
Protein Annotations
MapMan:1.2.1.2.3 | MapMan:19.1.7.3 | Gene3D:2.30.33.40 | EMBL:AK355026 | InterPro:Chaperonin_GroES | InterPro:Chaperonin_GroES_sf |
UniProt:F2CTS4 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 |
GO:GO:0008150 | GO:GO:0009987 | InterPro:GroES-like_sf | EnsemblPlantsGene:HORVU1Hr1G054630 | EnsemblPlants:HORVU1Hr1G054630.2 | InterPro:IPR037124 |
PFAM:PF00166 | PRINTS:PR00297 | PANTHER:PTHR10772 | PANTHER:PTHR10772:SF13 | SMART:SM00883 | SUPFAM:SSF50129 |
UniParc:UPI0002004E3C | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CTS4]
Coordinates
chrchr1H:+:403305636..403309855
Molecular Weight (calculated)
14564.6 Da
IEP (calculated)
8.060
GRAVY (calculated)
0.099
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSLLAAAT SPFLLHGAVG STSRRPVAAP GRRAASSVRV RAAIKCDPSK VEPQSDRVLV RLETIPEKSA GGVLLPKSAV KFERYLMGEI LSVGVDVSEV
101: EAGKKVLFSD INAYEVDLGT EEKHCFCRES DLLAVVA
101: EAGKKVLFSD INAYEVDLGT EEKHCFCRES DLLAVVA
001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ
Arabidopsis Description
CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.