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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G214600.1 Wheat plastid 95.62 94.93
HORVU6Hr1G016500.1 Barley plastid 75.18 94.5
TraesCS1B01G228500.1 Wheat plastid 95.62 94.24
TraesCS1D01G217600.1 Wheat plastid 94.89 92.86
Os10t0566700-00 Rice plastid 83.21 81.43
EER94466 Sorghum plastid 72.26 73.88
Zm00001d047067_P001 Maize plastid 73.72 73.72
Zm00001d029997_P002 Maize plastid 70.07 71.64
Zm00001d002408_P002 Maize plastid 69.34 70.9
GSMUA_Achr11P... Banana plastid 66.42 63.64
GSMUA_Achr2P18220_001 Banana plastid 62.77 61.43
Solyc01g088610.2.1 Tomato plastid 59.85 60.74
PGSC0003DMT400004324 Potato plastid 59.85 60.74
CDY48244 Canola cytosol, plastid 46.72 59.81
AT3G60210.1 Thale cress plastid 58.39 57.97
KRH66392 Soybean plastid 56.2 57.46
KRH48902 Soybean plastid 56.2 57.46
CDY23449 Canola plastid 52.55 51.8
AT2G44650.1 Thale cress plastid 52.55 51.8
CDY30480 Canola plastid 51.09 50.36
Bra037640.1-P Field mustard plastid 51.09 50.36
Bra004853.1-P Field mustard plastid 51.09 50.36
HORVU3Hr1G111860.1 Barley plastid 37.23 47.22
VIT_15s0021g00830.t01 Wine grape plastid 50.37 45.39
Protein Annotations
MapMan:1.2.1.2.3MapMan:19.1.7.3Gene3D:2.30.33.40EMBL:AK355026InterPro:Chaperonin_GroESInterPro:Chaperonin_GroES_sf
UniProt:F2CTS4GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006457
GO:GO:0008150GO:GO:0009987InterPro:GroES-like_sfEnsemblPlantsGene:HORVU1Hr1G054630EnsemblPlants:HORVU1Hr1G054630.2InterPro:IPR037124
PFAM:PF00166PRINTS:PR00297PANTHER:PTHR10772PANTHER:PTHR10772:SF13SMART:SM00883SUPFAM:SSF50129
UniParc:UPI0002004E3CSEG:seg::::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CTS4]
Coordinates
chrchr1H:+:403305636..403309855
Molecular Weight (calculated)
14564.6 Da
IEP (calculated)
8.060
GRAVY (calculated)
0.099
Length
137 amino acids
Sequence
(BLAST)
001: MAPSLLAAAT SPFLLHGAVG STSRRPVAAP GRRAASSVRV RAAIKCDPSK VEPQSDRVLV RLETIPEKSA GGVLLPKSAV KFERYLMGEI LSVGVDVSEV
101: EAGKKVLFSD INAYEVDLGT EEKHCFCRES DLLAVVA
Best Arabidopsis Sequence Match ( AT3G60210.1 )
(BLAST)
001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ
Arabidopsis Description
CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.