Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400060280 | |
| PGSC0003DMT400073969 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60210.1 | PGSC0003DMT400060280 | AT1G23100.1 | 21798944 |
| AT3G60210.1 | PGSC0003DMT400073969 | AT1G23100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g088610.2.1 | Tomato | plastid | 97.04 | 97.04 |
| CDY48244 | Canola | cytosol, plastid | 59.26 | 74.77 |
| KRH66392 | Soybean | plastid | 68.15 | 68.66 |
| KRH48902 | Soybean | plastid | 68.15 | 68.66 |
| AT3G60210.1 | Thale cress | plastid | 68.89 | 67.39 |
| AT2G44650.1 | Thale cress | plastid | 68.89 | 66.91 |
| CDY23449 | Canola | plastid | 67.41 | 65.47 |
| Bra037640.1-P | Field mustard | plastid | 66.67 | 64.75 |
| CDY30480 | Canola | plastid | 66.67 | 64.75 |
| GSMUA_Achr2P18220_001 | Banana | plastid | 65.19 | 62.86 |
| Bra004853.1-P | Field mustard | plastid | 64.44 | 62.59 |
| Zm00001d029997_P002 | Maize | plastid | 60.74 | 61.19 |
| GSMUA_Achr11P... | Banana | plastid | 64.44 | 60.84 |
| Os10t0566700-00 | Rice | plastid | 62.96 | 60.71 |
| Zm00001d002408_P002 | Maize | plastid | 60.0 | 60.45 |
| EER94466 | Sorghum | plastid | 60.0 | 60.45 |
| TraesCS1A01G214600.1 | Wheat | plastid | 61.48 | 60.14 |
| Zm00001d047067_P001 | Maize | plastid | 60.74 | 59.85 |
| HORVU1Hr1G054630.2 | Barley | plastid | 60.74 | 59.85 |
| TraesCS1B01G228500.1 | Wheat | plastid | 61.48 | 59.71 |
| VIT_15s0021g00830.t01 | Wine grape | plastid | 66.67 | 59.21 |
| TraesCS1D01G217600.1 | Wheat | plastid | 60.74 | 58.57 |
| HORVU6Hr1G016500.1 | Barley | plastid | 40.74 | 50.46 |
| HORVU3Hr1G111860.1 | Barley | plastid | 34.81 | 43.52 |
Protein Annotations
| MapMan:1.2.1.2.3 | EntrezGene:102586513 | MapMan:19.1.7.3 | Gene3D:2.30.33.40 | InterPro:Chaperonin_GroES | InterPro:Chaperonin_GroES_sf |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:GroES-like_sf | InterPro:IPR037124 | UniProt:M0ZN89 | PFAM:PF00166 | EnsemblPlantsGene:PGSC0003DMG400001718 |
| PGSC:PGSC0003DMG400001718 | EnsemblPlants:PGSC0003DMT400004324 | PANTHER:PTHR10772 | PANTHER:PTHR10772:SF13 | SMART:SM00883 | SUPFAM:SSF50129 |
| UniParc:UPI000295FE96 | RefSeq:XP_006354639.1 | : | : | : | : |
Description
ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001718]
Coordinates
chr1:-:68436394..68440496
Molecular Weight (calculated)
14901.1 Da
IEP (calculated)
8.732
GRAVY (calculated)
-0.089
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTFLTLAK PFTSHSTNLP SFSPQRPIGL KRNSLRINAI SKKWEPTKVV PQADRVLIRL EELPEKSAGG VLLPKSAVKF ERYLMGEVLS VGAEVAQVET
101: GKKVLFSDIN AYEVDLGTDA RHCFCKESEL LALVE
101: GKKVLFSDIN AYEVDLGTDA RHCFCKESEL LALVE
001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ
Arabidopsis Description
CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.