Factsheet for Zm00001d047067_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009549_P002
Zm00001d012691_P001
Zm00001d038989_P002
Zm00001d043383_P001
Zm00001d043889_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60210.1	Zm00001d009549_P002	AT1G52240.1	21798944
AT3G60210.1	Zm00001d012691_P001	AT1G52240.1	21798944
AT3G60210.1	Zm00001d038989_P002	AT1G52240.1	21798944
AT3G60210.1	Zm00001d043383_P001	AT1G52240.1	21798944
AT3G60210.1	Zm00001d043889_P001	AT1G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94466	Sorghum	plastid	89.05	91.04
Zm00001d029997_P002	Maize	plastid	83.21	85.07
Zm00001d002408_P002	Maize	plastid	82.48	84.33
Os10t0566700-00	Rice	plastid	78.83	77.14
TraesCS1A01G214600.1	Wheat	plastid	74.45	73.91
HORVU1Hr1G054630.2	Barley	plastid	73.72	73.72
TraesCS1B01G228500.1	Wheat	plastid	72.26	71.22
TraesCS1D01G217600.1	Wheat	plastid	72.26	70.71
GSMUA_Achr11P...	Banana	plastid	68.61	65.73
HORVU6Hr1G016500.1	Barley	plastid	51.09	64.22
Solyc01g088610.2.1	Tomato	plastid	60.58	61.48
GSMUA_Achr2P18220_001	Banana	plastid	62.77	61.43
PGSC0003DMT400004324	Potato	plastid	59.85	60.74
CDY48244	Canola	cytosol, plastid	45.26	57.94
AT3G60210.1	Thale cress	plastid	57.66	57.25
KRH48902	Soybean	plastid	54.01	55.22
KRH66392	Soybean	plastid	53.28	54.48
AT2G44650.1	Thale cress	plastid	52.55	51.8
CDY23449	Canola	plastid	52.55	51.8
CDY30480	Canola	plastid	51.82	51.08
Bra037640.1-P	Field mustard	plastid	51.82	51.08
Bra004853.1-P	Field mustard	plastid	51.09	50.36
VIT_15s0021g00830.t01	Wine grape	plastid	51.09	46.05
HORVU3Hr1G111860.1	Barley	plastid	35.04	44.44

Protein Annotations

MapMan:1.2.1.2.3	EntrezGene:100381273	MapMan:19.1.7.3	Gene3D:2.30.33.40	UniProt:A0A1D6P6Q3	ProteinID:AQL05535.1
InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	InterPro:GroES-like_sf	InterPro:IPR037124	PFAM:PF00166
PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF13	SMART:SM00883	SUPFAM:SSF50129	UniParc:UPI000843F04E
EnsemblPlantsGene:Zm00001d047067	EnsemblPlants:Zm00001d047067_P001	EnsemblPlants:Zm00001d047067_T001	SEG:seg	:	:

Description

chloroplast chaperonin 10

Coordinates

chr9:-:117137241..117139739

Molecular Weight (calculated)

14621.7 Da

IEP (calculated)

7.258

GRAVY (calculated)

0.024

Length

137 amino acids

Sequence
(BLAST)

001: MAPSLLAAVS ASPFLLPGSS GISRRPLGAA PTRRAGLRVA ALKYDPAKGQ VAPQNDRVLV RLQQIPEKSA GGVLLPKSAV KFERYLMGEI LSVGADVSEV
101: EAGKKVLFSD INAYEVDLDT DEKHCFCRES DLLAVVE

Best Arabidopsis Sequence Match ( AT3G60210.1 )
(BLAST)

001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ

Arabidopsis Description

CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.