Factsheet for VIT_09s0002g02390.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006661	Potato	cytosol	56.38	73.74
KRH10002	Soybean	cytosol	73.8	73.12
KRH47139	Soybean	cytosol	71.01	69.44
KRH44164	Soybean	cytosol	71.54	69.33
KRH23329	Soybean	cytosol	22.74	64.53
CDY24051	Canola	cytosol	64.49	63.98
CDY33065	Canola	cytosol	64.49	63.98
Bra037982.1-P	Field mustard	cytosol	64.1	63.34
AT1G55180.1	Thale cress	cytosol	64.1	63.25
Os09t0421300-01	Rice	cytosol	47.21	43.45
Zm00001d005770_P001	Maize	cytosol	43.62	43.33
TraesCS5B01G222500.1	Wheat	cytosol	47.47	43.22
VIT_04s0008g05450.t01	Wine grape	cytosol	44.41	43.04
VIT_12s0035g00200.t01	Wine grape	cytosol, nucleus, peroxisome	36.17	43.04
TraesCS5A01G223500.1	Wheat	cytosol	47.21	42.98
TraesCS5D01G231100.1	Wheat	cytosol	47.34	42.89
VIT_09s0002g06760.t01	Wine grape	cytosol	46.14	42.73
EER98913	Sorghum	cytosol	46.94	42.68
HORVU5Hr1G064520.1	Barley	cytosol	46.81	42.36
VIT_11s0016g05370.t01	Wine grape	cytosol	44.81	41.45
VIT_11s0016g05360.t01	Wine grape	cytosol	44.81	41.2
VIT_02s0025g04620.t01	Wine grape	cytosol	42.15	37.29
HORVU7Hr1G082870.1	Barley	cytosol	25.93	35.52
VIT_00s0264g00100.t01	Wine grape	cytosol	41.22	35.51
VIT_18s0001g00770.t01	Wine grape	nucleus	41.22	35.43
VIT_15s0048g01160.t01	Wine grape	cytosol	42.02	29.07
VIT_00s0264g00090.t01	Wine grape	cytosol	10.37	24.68
VIT_05s0077g01830.t01	Wine grape	cytosol	26.2	17.72

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:100256679	wikigene:100256679	Gene3D:3.30.870.10	MapMan:5.7.2.4.4
InterPro:C2_dom	ProteinID:CCB59352	ProteinID:CCB59352.1	UniProt:F6HY29	EMBL:FN596494	GO:GO:0003674
GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042
GO:GO:0016787	GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736	EMBL:KT188575
EntrezGene:LOC100256679	wikigene:LOC100256679	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PFAM:PF13091
PIRSF:PIRSF036470	InterPro:PLD-like_dom	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln
PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF79	SMART:SM00155	SUPFAM:SSF49562	SUPFAM:SSF56024
UniParc:UPI0001983E4F	ArrayExpress:VIT_09s0002g02390	EnsemblPlantsGene:VIT_09s0002g02390	EnsemblPlants:VIT_09s0002g02390.t01	RefSeq:XP_002276169	RefSeq:XP_002276169.1

Description

Phospholipase D [Source:UniProtKB/TrEMBL;Acc:F6HY29]

Coordinates

chr9:-:2169387..2172318

Molecular Weight (calculated)

86238.9 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.388

Length

752 amino acids

Sequence
(BLAST)

001: MGRKHKFFHG TLEATIFHAT PYTPSFPFNC MFLNGKACYV TIKIDDKKVA KTSHESDRVW NQTFQILCAH LIDSTITITL KTKCSILGRI QIQAHQIVHE
101: ASFIDGYFPL LMENGRPNPE LKLRFMLWFR PAEFEPTWGN ILWNGDFQGV KNATFPQRSD CSVILYQDAH HCSTFQPPYS LCKAPRKLWE DVYKAIDDAK
201: YLIYIAGWSF NPKMVLVRDP QTDIPYGHGV KLGELLKRKA EEGVAVRIMV WDDETSLPLI KNEGVMSTHD EEAFAYFKHT KVVCKLCPRL HFKFPTLFAH
301: HQKTITVDSR SSISPSHREI MSFVGGLDLC NGRYDTEEHS LFRTLNTESH SQDFYQTSLI GACLQKGGPR EPWHDAHACI TGEAARDVLT NFEQRWSKQC
401: NPSLLVPIGT ITELASIPSE RDWKVQVYRS IDHVSASHLP RNFAVEQSIH EAYVEAIRRA ERFIYIENQY FIGGCHLWEK DQHAGCRNLI PIEIALKVAS
501: KIRAKERFAV YILIPMWPEG APESEPGQDI LHWTRETMAM MYRLIGEAID ENGGSGHPRD YLNFFCLANR EEKGKGEYAS PHPPHPATQY WNAQKHRRFM
601: VYVHSKLMIV DDTYILIGSA NVNQRSMDGQ RDTEIAVGCY QSKNGENEMC RGDIHAYRMS LWYEHTGLVE VVFQEPQSLE CVERLRFIGE KMWGIYSAEE
701: VEDMEGVHLV TYPVTVTKDG SVEDLAEGGN FPDTNTPIRG RRSRVLPPIF TT

Best Arabidopsis Sequence Match ( AT1G55180.1 )
(BLAST)

001: MELEEQKKYF HGTLEITIFD ATPFSPPFPF NCICTKPKAA YVTIKINKKK VAKTSSEYDR IWNQTFQILC AHPVTDTTIT ITLKTRCSVL GRFRISAEQI
101: LTSNSAVING FFPLIADNGS TKRNLKLKCL MWFRPAYLEP GWCRALEEAS FQGIRNASFP QRSNCRVVLY QDAHHKATFD PRVDDVPFNA RNLWEDVYKA
201: IESARHLVYI AGWALNPNLV LVRDNETEIP HAVGVTVGEL LKRKSEEGVA VRVMLWNDET SLPMIKNKGV MRTNVERALA YFRNTNVVCR LCPRLHKKLP
301: TAFAHHQKTI TLDTRVTNSS TKEREIMSFL GGFDLCDGRY DTEEHSLFRT LGTEADFYQT SVAGAKLSRG GPREPWHDCH VSVVGGAAWD VLKNFEQRWT
401: KQCNPSVLVN TSGIRNLVNL TGPTEENNRK WNVQVLRSID HISATEMPRG LPVEKSVHDG YVAAIRKAER FIYIENQYFM GSCDHWESKN DKICSGCTNL
501: IPVEIALKIA AKIRARERFA VYIVIPMWPE GPPESETVEE ILHWTRETMS MMYQIIGEAI WEVGDKSHPR DYLNFFCLAN REEKRDGEFE AVSSPHQKTH
601: YWNAQRNRRF MVYVHSKLMI VDDTYILIGS ANINQRSMDG CRDTEIAIGC YQTNTNNTNE IQAYRLSLWY EHTGGKITAD DLSSSEPESL ECVRGLRTIG
701: EQMWEIYSGD KVVDMLGIHL VAYPISVTGD GAVEEVGDGC FPDTKTLVKG KRSKMFPPVL TT

Arabidopsis Description

PLDALPHA4Phospholipase D alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.