Factsheet for VIT_01s0010g03250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
mitochondrion 3
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g03200.t01	Wine grape	cytosol, nucleus, plastid	58.0	96.67
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	58.0	15.59
Zm00001d030829_P001	Maize	mitochondrion	58.0	14.5
Zm00001d023696_P001	Maize	plastid	58.0	11.46
Zm00001d035375_P002	Maize	mitochondrion, nucleus	24.0	9.68
Zm00001d043127_P001	Maize	endoplasmic reticulum	58.0	9.12
PGSC0003DMT400028972	Potato	mitochondrion	68.0	7.22
Zm00001d014049_P001	Maize	mitochondrion	24.0	5.88
VIT_01s0010g00690.t01	Wine grape	mitochondrion	80.0	4.09
TraesCS7B01G411000.1	Wheat	nucleus	62.0	4.03
Os06t0652000-01	Rice	plastid	64.0	3.97
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	66.0	3.86
VIT_14s0083g00790.t01	Wine grape	cytosol	76.0	3.67
KRH03007	Soybean	plastid	68.0	3.58
VIT_11s0037g00630.t01	Wine grape	plastid	70.0	3.58
EER88745	Sorghum	plastid	64.0	3.34
Solyc07g005930.2.1	Tomato	nucleus	66.0	3.33
Zm00001d046835_P002	Maize	plastid	64.0	3.23
TraesCS7A01G503900.1	Wheat	plastid	60.0	3.16
Bra039230.1-P	Field mustard	plastid	60.0	3.06
AT2G24120.1	Thale cress	plastid	60.0	3.02
KRH63538	Soybean	cytosol, mitochondrion, nucleus	6.0	1.99
KRH72339	Soybean	cytosol, mitochondrion, nucleus	10.0	1.73
Bra032120.1-P	Field mustard	plastid	28.0	1.49
GSMUA_Achr1P09550_001	Banana	mitochondrion	10.0	1.36
Zm00001d007570_P001	Maize	cytosol	0.0	0.0
Zm00001d021198_P001	Maize	cytosol	0.0	0.0
Zm00001d026323_P001	Maize	cytosol	0.0	0.0
Zm00001d034215_P001	Maize	mitochondrion	0.0	0.0
CDY44514	Canola	cytosol	0.0	0.0
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	0.0	0.0
Zm00001d044404_P001	Maize	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:3.30.70.370	MapMan:35.1	ProteinID:CBI27618	ProteinID:CBI27618.3
UniProt:D7TAU5	InterPro:DNA-dir_Rpol_phage-type	EMBL:FN595754	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006390	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0034245	PFAM:PF00940
ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF0	SUPFAM:SSF56672	UniParc:UPI0001BE318D	ArrayExpress:VIT_01s0010g03250
EnsemblPlantsGene:VIT_01s0010g03250	EnsemblPlants:VIT_01s0010g03250.t01	:	:	:	:

Description

No Description!

Coordinates

chr1:+:20529405..20530313

Molecular Weight (calculated)

5404.5 Da

IEP (calculated)

7.584

GRAVY (calculated)

-0.182

Length

50 amino acids

Sequence
(BLAST)

1: MCINLSDALR SSPPKTTISH MPVHQDGSCN GLQHHAALGR DKVVEFSIFG

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.