Factsheet for TraesCS7A01G503900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	84.09	93.33
TraesCS7B01G411000.1	Wheat	nucleus	75.03	92.59
Os06t0652000-01	Rice	plastid	75.87	89.33
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	17.28	88.17
Zm00001d030829_P001	Maize	mitochondrion	18.44	87.5
Zm00001d007570_P001	Maize	cytosol	13.7	85.53
Zm00001d026323_P001	Maize	cytosol	13.7	85.53
EER88745	Sorghum	plastid	85.04	84.15
Zm00001d021198_P001	Maize	cytosol	20.97	81.56
Zm00001d046835_P002	Maize	plastid	85.04	81.43
Zm00001d014049_P001	Maize	mitochondrion	15.6	72.55
Zm00001d023696_P001	Maize	plastid	19.28	72.33
PGSC0003DMT400028972	Potato	mitochondrion	35.72	71.97
Zm00001d034215_P001	Maize	mitochondrion	12.86	70.11
KRH63115	Soybean	mitochondrion	40.25	69.84
Zm00001d043127_P001	Maize	endoplasmic reticulum	23.18	69.18
Zm00001d044404_P001	Maize	mitochondrion	8.54	66.39
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	12.54	64.67
Zm00001d035375_P002	Maize	mitochondrion, nucleus	8.22	62.9
VIT_01s0010g03250.t01	Wine grape	cytosol	3.16	60.0
KRH63538	Soybean	cytosol, mitochondrion, nucleus	9.27	58.28
VIT_11s0037g00630.t01	Wine grape	plastid	57.32	55.57
CDY34797	Canola	plastid	55.32	54.69
CDX76837	Canola	plastid	55.43	54.17
CDY39695	Canola	plastid	55.01	53.65
Solyc07g005930.2.1	Tomato	nucleus	55.95	53.53
Bra039230.1-P	Field mustard	plastid	55.22	53.52
CDY20283	Canola	plastid	54.9	53.38
KRH03007	Soybean	plastid	53.21	53.1
KRH54896	Soybean	plastid	54.27	52.93
Bra032120.1-P	Field mustard	plastid	52.27	52.77
AT2G24120.1	Thale cress	plastid	54.9	52.47
TraesCS5A01G167300.2	Wheat	plastid	52.48	51.08
KRH72339	Soybean	cytosol, mitochondrion, nucleus	15.17	49.83
CDY44514	Canola	cytosol	6.22	47.2
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	61.96	33.28

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR024075	InterPro:IPR037159	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900
PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672
EnsemblPlantsGene:TraesCS7A01G503900	EnsemblPlants:TraesCS7A01G503900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7A:-:692340520..692348859

Molecular Weight (calculated)

107652.0 Da

IEP (calculated)

8.802

GRAVY (calculated)

-0.423

Length

949 amino acids

Sequence
(BLAST)

001: MPLLLAPIST CAPPPRPRLR RLSPPPPMVA VLPAPAPPPR PVTLLPIPTP PPLNTDAFDW LDLFAFLNSP ADSYQIPHPP PPLADNAAVE EELAIILERE
101: KDRERARRAD HRRLRQRQVK AETEAWARAA EEYRQLEREM LDRHLAPQLP YVKSLFLGWF EPLRDAVARD QDVQRRKRVK HVYAKYLLLL PAEKVAVIVM
201: HKMMGLLMSS KDGCGSVRVV QAAHSIGEAV EREYKVQAFF QKTRRKTRSK TDSENDPALN KEQAKCRKLV KSLVRRRKLT EAQKLVQQEI ELEEWGTEAQ
301: VKLGTRLIEL LLDSAFVQSP ADQTPDSSPD FRPAFKHVLR KPIVENGRLK KKHFVIECDP LVHEGFESTA RHVEIPYLPM LVPPTKWKGY DKGGHLFLPS
401: YVMRTHGVKD QKEAIKSVPR KQLRKVFEAL DILGGTKWRV NRRVHDVVET IWSRGGGIAG LVDKGNIPLP EQPETEDPDE IQKWKWSVKK TKKANRELHA
501: ERCDTELKLS VARKMREEDG FYYPHNLDFR GRAYPMHPHL SHLGSDLCRG VLEYAEGRPL GKSGLRWLKI HLANKYGGGI EKLSHESKLA FVEDHLPDIF
601: DSASNPVDGN CWWINAEDPF QCLAACMDLS KALESPSPHD AVSHLPIHQD GSCNGLQHYA ALGRDYMGAA AVNLVPGEKP ADIYSEIAAR VLDVVREDSM
701: KDPATDPSVS LAKVLVDEVD RKLVKQTVMT SVYGVTFIGA RQQIMKRLQE KGHITDDKLL YDVSCYATRV TLDALGQMFQ SARAIMAWLG DCAKMIASKN
801: QPVRWTSPVG LPVVQPYKKY KNYMIRTSLQ CLALRREGDA IATQRQKAAF PPNFVHSLDS SHMMMTAITC KEAGLHFAGV HDSFWVHACD VDKMNQILRE
901: QFVELYSMPI LENLLEEFQT LFPTVEFPPC PAQGNFDVRE VLKSTYFFN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.