Factsheet for Zm00001d007570_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026323_P001	Maize	cytosol	96.71	96.71
Zm00001d021198_P001	Maize	cytosol	70.39	43.85
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	46.05	38.04
Os06t0652000-01	Rice	plastid	84.21	15.88
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	83.55	14.85
EER88745	Sorghum	plastid	92.76	14.7
Zm00001d046835_P002	Maize	plastid	95.39	14.63
TraesCS7A01G503900.1	Wheat	plastid	85.53	13.7
TraesCS7B01G411000.1	Wheat	nucleus	61.84	12.22
VIT_11s0037g00630.t01	Wine grape	plastid	54.61	8.48
Solyc07g005930.2.1	Tomato	nucleus	53.95	8.27
KRH03007	Soybean	plastid	51.32	8.2
KRH54896	Soybean	plastid	50.66	7.91
Bra032120.1-P	Field mustard	plastid	48.03	7.77
CDY34797	Canola	plastid	48.03	7.6
CDY20283	Canola	plastid	48.68	7.58
CDX76837	Canola	plastid	48.03	7.52
CDY39695	Canola	plastid	48.03	7.5
Bra039230.1-P	Field mustard	plastid	48.03	7.46
AT2G24120.1	Thale cress	plastid	48.68	7.45
Zm00001d022169_P001	Maize	mitochondrion	46.05	7.18
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	60.53	5.21
KRH63115	Soybean	mitochondrion	8.55	2.38
CDY44514	Canola	cytosol	1.32	1.6
Zm00001d023696_P001	Maize	plastid	1.97	1.19
Zm00001d035375_P002	Maize	mitochondrion, nucleus	0.66	0.81
Zm00001d043127_P001	Maize	endoplasmic reticulum	1.32	0.63
Zm00001d014049_P001	Maize	mitochondrion	0.0	0.0
VIT_01s0010g03250.t01	Wine grape	cytosol	0.0	0.0
PGSC0003DMT400028972	Potato	mitochondrion	0.0	0.0
Zm00001d030829_P001	Maize	mitochondrion	0.0	0.0
Zm00001d034215_P001	Maize	mitochondrion	0.0	0.0
KRH72339	Soybean	cytosol, mitochondrion, nucleus	0.0	0.0
Zm00001d044404_P001	Maize	mitochondrion	0.0	0.0
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	0.0	0.0
KRH63538	Soybean	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.6.1.1	UniProt:A0A1D6F789	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
ProteinID:ONM27105.1	PFAM:PF14700	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RPOL_N	SMART:SM01311
SUPFAM:SSF56672	UniParc:UPI0008432640	EnsemblPlantsGene:Zm00001d007570	EnsemblPlants:Zm00001d007570_P001	EnsemblPlants:Zm00001d007570_T001	SEG:seg

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr2:+:235043560..235044756

Molecular Weight (calculated)

17684.4 Da

IEP (calculated)

9.025

GRAVY (calculated)

-0.540

Length

152 amino acids

Sequence
(BLAST)

001: MSEAQRLVQQ ELELEEWGTE AQVKLGSRLI ELLLDSAFVQ PPADQTPDSS PYIRPAFKHV LRHPIIENGR LKKKHWVIEC DHLVHEGFES TAWHVDIPNL
101: PMLVPRKKWK GYDKGGHLFL PSYIMRTHGV KDQKDAINSV PRKQLRKVFE VY

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.