Factsheet for PGSC0003DMT400028972

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003507	Potato	cytosol	40.34	74.51
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	27.81	70.43
KRH63115	Soybean	mitochondrion	81.74	70.38
KRH63538	Soybean	cytosol, mitochondrion, nucleus	22.29	69.54
VIT_01s0010g03250.t01	Wine grape	cytosol	7.22	68.0
KRH72339	Soybean	cytosol, mitochondrion, nucleus	38.85	63.32
Zm00001d030829_P001	Maize	mitochondrion	24.63	58.0
Zm00001d014049_P001	Maize	mitochondrion	23.78	54.9
Zm00001d034215_P001	Maize	mitochondrion	19.32	52.3
Zm00001d044404_P001	Maize	mitochondrion	12.95	50.0
Zm00001d035375_P002	Maize	mitochondrion, nucleus	12.74	48.39
Zm00001d043127_P001	Maize	endoplasmic reticulum	32.06	47.48
Solyc07g005930.2.1	Tomato	nucleus	98.3	46.67
Zm00001d023696_P001	Maize	plastid	24.63	45.85
Os06t0652000-01	Rice	plastid	72.4	42.31
TraesCS7B01G411000.1	Wheat	nucleus	68.15	41.74
VIT_11s0037g00630.t01	Wine grape	plastid	84.93	40.86
KRH03007	Soybean	plastid	81.74	40.48
KRH54896	Soybean	plastid	81.74	39.57
CDY34797	Canola	plastid	80.47	39.48
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	71.55	39.42
CDY39695	Canola	plastid	80.68	39.05
CDY20283	Canola	plastid	80.89	39.04
CDX76837	Canola	plastid	80.25	38.93
Bra039230.1-P	Field mustard	plastid	80.47	38.71
AT2G24120.1	Thale cress	plastid	80.89	38.37
Bra032120.1-P	Field mustard	plastid	74.52	37.34
TraesCS7A01G503900.1	Wheat	plastid	71.97	35.72
EER88745	Sorghum	plastid	71.97	35.35
Zm00001d046835_P002	Maize	plastid	72.19	34.31
GSMUA_Achr1P09550_001	Banana	mitochondrion	25.05	31.98
Zm00001d021198_P001	Maize	cytosol	15.71	30.33
PGSC0003DMT400003501	Potato	cytosol	33.55	23.51
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	0.64	1.63
Zm00001d026323_P001	Maize	cytosol	0.0	0.0
Zm00001d007570_P001	Maize	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.150.20	Gene3D:1.10.287.280	MapMan:15.6.1.1	Gene3D:3.30.70.370
InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	UniProt:M1AS01	PFAM:PF00940	EnsemblPlantsGene:PGSC0003DMG400011152	PGSC:PGSC0003DMG400011152
EnsemblPlants:PGSC0003DMT400028972	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	SUPFAM:SSF56672
UniParc:UPI000294A8B4	SEG:seg	:	:	:	:

Description

DNA-directed RNA polymerase 3A, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400011152]

Coordinates

chr7:+:1249467..1256724

Molecular Weight (calculated)

53251.0 Da

IEP (calculated)

7.155

GRAVY (calculated)

-0.285

Length

471 amino acids

Sequence
(BLAST)

001: MELKRWKWRV RKAKKINQEL HSQRCDTELK LSVARKLKDE EGFYYPHNLD FRGRAYPMHP HLNHLSSDLC RGILEFAEGR PLGKSGLRWL KVHLASLYAG
101: GIEKLCYDAR IAFVENHIDD ILDSAHNPLN GNRWWLNAED PLQCLAACIN LSEALKSPSP HTVISHLPIH QDGSCNGLQH YAALGRDSME AAAVNLVAGE
201: KPADVYTEIA LRVDHIIRGD STKDPATDPN ALLAKLLIDQ VDRKLVKQTV MTSVYGVTYV GAREQIKRRL EEKGLIDDDR LLFTASCYAA KVTLAALGEL
301: FQAARGTMTW LGDCAKVIAS ENQPVRWTTP LGLPVVQPYF KTQRHVIRTS LQVLALQREG DAVEVRKQRT AFPPNFVHSL DGSHMMMTAV ACRDAGLHFA
401: GVHDSFWTHA CDVDQMNRIL REKFVELYSM PILEDLLESF QESYPALTFP PLPKRGDFDL QEVLESPYFF N

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.