Factsheet for Zm00001d044404_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034215_P001	Maize	mitochondrion	92.62	64.94
Zm00001d014049_P001	Maize	mitochondrion	95.9	57.35
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	58.2	38.17
Zm00001d021198_P001	Maize	cytosol	59.84	29.92
Zm00001d030829_P001	Maize	mitochondrion	43.44	26.5
Zm00001d043127_P001	Maize	endoplasmic reticulum	61.48	23.58
CDY44514	Canola	cytosol	22.95	22.4
Zm00001d023696_P001	Maize	plastid	41.8	20.16
Zm00001d035375_P002	Maize	mitochondrion, nucleus	16.39	16.13
PGSC0003DMT400028972	Potato	mitochondrion	50.0	12.95
KRH63115	Soybean	mitochondrion	51.64	11.52
TraesCS7B01G411000.1	Wheat	nucleus	61.48	9.75
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	66.39	9.47
Os06t0652000-01	Rice	plastid	62.3	9.43
EER88745	Sorghum	plastid	68.03	8.65
TraesCS7A01G503900.1	Wheat	plastid	66.39	8.54
Zm00001d046835_P002	Maize	plastid	68.03	8.38
Bra032120.1-P	Field mustard	plastid	56.56	7.34
CDY34797	Canola	plastid	57.38	7.29
CDX76837	Canola	plastid	57.38	7.21
Bra039230.1-P	Field mustard	plastid	57.38	7.15
CDY39695	Canola	plastid	56.56	7.09
CDY20283	Canola	plastid	56.56	7.07
VIT_11s0037g00630.t01	Wine grape	plastid	56.56	7.05
AT2G24120.1	Thale cress	plastid	55.74	6.85
KRH54896	Soybean	plastid	54.1	6.78
Solyc07g005930.2.1	Tomato	nucleus	54.1	6.65
Zm00001d022169_P001	Maize	mitochondrion	52.46	6.56
KRH03007	Soybean	plastid	50.82	6.52
GSMUA_Achr1P15880_001	Banana	cytosol, mitochondrion, nucleus	53.28	3.68
KRH63538	Soybean	cytosol, mitochondrion, nucleus	2.46	1.99
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	2.46	1.63
KRH72339	Soybean	cytosol, mitochondrion, nucleus	1.64	0.69
Zm00001d026323_P001	Maize	cytosol	0.0	0.0
Zm00001d007570_P001	Maize	cytosol	0.0	0.0
VIT_01s0010g03250.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.6.1.1	UniProt:A0A1D6NLF9	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
ProteinID:ONM41060.1	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	SUPFAM:SSF56672	UniParc:UPI000842A556	EnsemblPlantsGene:Zm00001d044404
EnsemblPlants:Zm00001d044404_P001	EnsemblPlants:Zm00001d044404_T001	:	:	:	:

Description

DNA-directed RNA polymerase 3 chloroplastic

Coordinates

chr3:+:227295424..227296435

Molecular Weight (calculated)

14300.5 Da

IEP (calculated)

10.087

GRAVY (calculated)

-0.661

Length

122 amino acids

Sequence
(BLAST)

001: MMLLRLSGVK VEALQGWWTR QIFLCLNDQN QRTLMKCRNG STSIKKAKKT NRELHAERCD TKLKLSVARK MREEDEFYYP HNLDFRGRAY PMHPHLSHLG
101: SDLCRGVLEY AEGRPLGKYG LF

Best Arabidopsis Sequence Match ( AT5G15700.1 )
(BLAST)

0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N

Arabidopsis Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.