Factsheet for Bra032120.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39695	Canola	plastid	99.04	95.68
Bra039230.1-P	Field mustard	plastid	90.32	86.72
AT2G24120.1	Thale cress	plastid	88.62	83.89
PGSC0003DMT400028972	Potato	mitochondrion	37.34	74.52
KRH63115	Soybean	mitochondrion	40.64	69.84
KRH63538	Soybean	cytosol, mitochondrion, nucleus	10.85	67.55
Zm00001d045595_P001	Maize	cytosol, mitochondrion, nucleus	12.87	65.05
Zm00001d030829_P001	Maize	mitochondrion	13.4	63.0
VIT_11s0037g00630.t01	Wine grape	plastid	64.57	62.0
Zm00001d014049_P001	Maize	mitochondrion	12.98	59.8
Os06t0652000-01	Rice	plastid	50.96	59.43
Zm00001d034215_P001	Maize	mitochondrion	10.96	59.2
KRH03007	Soybean	plastid	59.57	58.89
KRH72339	Soybean	cytosol, mitochondrion, nucleus	17.98	58.48
Solyc07g005930.2.1	Tomato	nucleus	61.38	58.17
Zm00001d021198_P001	Maize	cytosol	14.89	57.38
Zm00001d044404_P001	Maize	mitochondrion	7.34	56.56
HORVU7Hr1G112980.9	Barley	mitochondrion, nucleus, plastid	51.06	56.14
TraesCS7B01G411000.1	Wheat	nucleus	45.0	55.01
KRH54896	Soybean	plastid	56.6	54.68
Bra023533.1-P	Field mustard	mitochondrion	55.32	53.33
Zm00001d023696_P001	Maize	plastid	14.15	52.57
EER88745	Sorghum	plastid	53.51	52.45
TraesCS7A01G503900.1	Wheat	plastid	52.77	52.27
Bra004354.1-P	Field mustard	mitochondrion	52.77	51.08
Zm00001d043127_P001	Maize	endoplasmic reticulum	17.23	50.94
Zm00001d046835_P002	Maize	plastid	53.62	50.86
Zm00001d035375_P002	Maize	mitochondrion, nucleus	6.7	50.81
Bra004010.1-P	Field mustard	plastid	48.51	50.55
Zm00001d026323_P001	Maize	cytosol	7.87	48.68
Zm00001d007570_P001	Maize	cytosol	7.77	48.03
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	6.38	46.88
Bra008681.1-P	Field mustard	plastid	22.55	43.18
Zm00001d043100_P001	Maize	endoplasmic reticulum, extracellular	7.55	38.59
GSMUA_Achr1P09550_001	Banana	mitochondrion	14.36	36.59
VIT_01s0010g03250.t01	Wine grape	cytosol	1.49	28.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	EnsemblPlantsGene:Bra032120	EnsemblPlants:Bra032120.1	EnsemblPlants:Bra032120.1-P	ncoils:Coil
InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR024075	InterPro:IPR037159	UniProt:M4ETI9
PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	PANTHER:PTHR10102	PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf
InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	UniParc:UPI0002544984	SEG:seg	:

Description

AT2G24120 (E=0.0) PDE319, SCA3 | SCA3 (SCABRA 3); DNA binding / DNA-directed RNA polymerase

Coordinates

chrA04:-:10760685..10765466

Molecular Weight (calculated)

106748.0 Da

IEP (calculated)

9.749

GRAVY (calculated)

-0.413

Length

940 amino acids

Sequence
(BLAST)

001: MDPSPAAASP SLSLNQTPHF HHQTSLITWL KPPPSSGLFR RKTLPISAAS SSSSTSLSIT DKPTSHFHGN LIDTFESHHP TTKGATFIEE PLERNELSSR
101: RRLFTQDPPW ISALFLKGLT RTVDQTLKLE KKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRELEKEMCE KSLAPNLPYV KHMFLGWFQP LRDVIEREQR
201: LQKSKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE HEVGIHNFLK RTRKNNAGDS QEEVKDKQLL RKRVNSLIRR
301: KRIIDALKVV KSEGIKPWGR ATQAKLGSRL LELLMETAYV QPPLTQSGDS IPEVRPAFRH KFKTVTKYPG SKMVRRYGVI ECDSLLLAGL DKSAKHMLIP
401: YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISSKTAHRV FEALDTLGNT KWRVNRKILD VVEKLWADGG NIAGLVNRED VPIPEKPLSE
501: DPEEIQTWKW SVRKAKKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE GRPLGKSGLY WLKIHLANLY
601: AGGVEKLSHD GRLAFVENHL DDIIDSAENA VHGKRWWLKA EDPFQCLAAC VILAQALKSP SPHSVISNLP IHQFEAAAVN LVAGDKPADV YSEISLRVHE
701: IMKKDSSKDP ESNPTAALAK ILINQVDRKL VKQTVMTSVY GVTYVGAREQ IKRRLEEKGV ITDERMLFAA ACYSAKVTLA ALGEIFEAAR AIMSWLGDCA
801: KIIASDNHPV RWTTPLGLPV VQPYCRSERH LVDVRKQRTA FPPNFVHSLD GTHMMMTAVA CREAGLNFAG VHDSYWTHAC DVDTMNRILR EKFVELYSSP
901: ILEDLLQSFQ ESYPTLVFPP VPKRGDFDLK EVLKSQYFFN

Best Arabidopsis Sequence Match ( AT2G24120.1 )
(BLAST)

001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN

Arabidopsis Description

RPOT3DNA-directed RNA polymerase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O24600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.