Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 2
- nucleus 1
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07470 | Soybean | cytosol, mitochondrion, nucleus | 52.34 | 31.6 |
| KRH45290 | Soybean | cytosol, mitochondrion, nucleus | 51.56 | 25.88 |
| Bra008681.1-P | Field mustard | plastid | 67.19 | 17.52 |
| Bra023533.1-P | Field mustard | mitochondrion | 61.72 | 8.1 |
| Bra004010.1-P | Field mustard | plastid | 51.56 | 7.32 |
| OQU90275 | Sorghum | mitochondrion | 55.47 | 7.27 |
| Zm00001d022169_P001 | Maize | mitochondrion | 53.91 | 7.08 |
| Bra004354.1-P | Field mustard | mitochondrion | 52.34 | 6.9 |
| GSMUA_Achr3P28120_001 | Banana | mitochondrion | 51.56 | 6.85 |
| VIT_01s0010g00690.t01 | Wine grape | mitochondrion | 52.34 | 6.85 |
| Solyc05g010660.2.1 | Tomato | mitochondrion | 52.34 | 6.75 |
| TraesCS5B01G164300.1 | Wheat | plastid | 52.34 | 6.67 |
| TraesCS5D01G171600.1 | Wheat | plastid | 52.34 | 6.67 |
| Bra032120.1-P | Field mustard | plastid | 46.88 | 6.38 |
| HORVU5Hr1G051530.5 | Barley | mitochondrion | 52.34 | 6.36 |
| Bra039230.1-P | Field mustard | plastid | 46.09 | 6.03 |
| TraesCS5A01G167300.2 | Wheat | plastid | 34.38 | 4.51 |
| Os09t0246200-01 | Rice | mitochondrion | 10.94 | 1.47 |
| KRH07469 | Soybean | mitochondrion | 0.0 | 0.0 |
| KRH45285 | Soybean | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:3.30.70.370 | MapMan:35.1 | EnsemblPlantsGene:Bra027253 | EnsemblPlants:Bra027253.1 |
| EnsemblPlants:Bra027253.1-P | InterPro:DNA-dir_Rpol_phage-type | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | UniProt:M4EEP1 | PFAM:PF00940 | PANTHER:PTHR10102 |
| PANTHER:PTHR10102:SF0 | SUPFAM:SSF56672 | UniParc:UPI0002547A30 | : | : | : |
Description
AT5G15700 (E=3e-044) | DNA-directed RNA polymerase (RPOT2)
Coordinates
chrA05:+:19958755..19959323
Molecular Weight (calculated)
14817.1 Da
IEP (calculated)
5.532
GRAVY (calculated)
0.115
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMTAVTCKR AGLCFAGVHD SFWTHACDVD KLNKILREKF VELYSQPILE NLLESFEKSF PHLDFPPLPE RGDLDLKVVL DSPYFLLELF FGQMAMANIP
101: VNFSSNLIVE MTGLWNRRIH CYEHYGIV
101: VNFSSNLIVE MTGLWNRRIH CYEHYGIV
0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N
Arabidopsis Description
DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.