Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G171600.1 | Wheat | plastid | 99.6 | 99.6 |
| TraesCS5A01G167300.2 | Wheat | plastid | 94.42 | 97.23 |
| HORVU5Hr1G051530.5 | Barley | mitochondrion | 96.81 | 92.31 |
| PGSC0003DMT400003507 | Potato | cytosol | 21.12 | 83.14 |
| KRH45290 | Soybean | cytosol, mitochondrion, nucleus | 20.72 | 81.57 |
| Os09t0246200-01 | Rice | mitochondrion | 75.6 | 79.81 |
| OQU90275 | Sorghum | mitochondrion | 76.69 | 78.89 |
| Zm00001d022169_P001 | Maize | mitochondrion | 76.49 | 78.77 |
| Solyc02g089340.2.1 | Tomato | cytosol, mitochondrion, nucleus | 52.99 | 74.82 |
| CDY70786 | Canola | cytosol, mitochondrion, nucleus | 16.73 | 71.19 |
| KRH07470 | Soybean | cytosol, mitochondrion, nucleus | 14.54 | 68.87 |
| VIT_01s0010g00690.t01 | Wine grape | mitochondrion | 67.03 | 68.81 |
| GSMUA_Achr3P28120_001 | Banana | mitochondrion | 65.94 | 68.74 |
| Solyc05g010660.2.1 | Tomato | mitochondrion | 66.33 | 67.07 |
| PGSC0003DMT400003501 | Potato | cytosol | 43.13 | 64.43 |
| VIT_14s0083g00790.t01 | Wine grape | cytosol | 66.14 | 64.15 |
| Bra023533.1-P | Field mustard | mitochondrion | 61.85 | 63.69 |
| KRH01430 | Soybean | plastid | 66.33 | 63.67 |
| KRH07469 | Soybean | mitochondrion | 50.0 | 62.59 |
| CDY33562 | Canola | mitochondrion | 59.76 | 62.57 |
| CDX95968 | Canola | mitochondrion | 59.86 | 61.9 |
| CDX90977 | Canola | plastid | 62.15 | 61.78 |
| Bra004354.1-P | Field mustard | mitochondrion | 59.66 | 61.69 |
| CDX85538 | Canola | plastid | 62.05 | 61.68 |
| KRH45285 | Soybean | mitochondrion | 42.23 | 61.45 |
| KRH45146 | Soybean | mitochondrion | 64.74 | 61.44 |
| AT1G68990.2 | Thale cress | mitochondrion | 59.56 | 60.83 |
| Bra004010.1-P | Field mustard | plastid | 53.88 | 59.98 |
| CDY04262 | Canola | mitochondrion | 54.38 | 59.61 |
| CDY07360 | Canola | mitochondrion | 51.89 | 58.94 |
| CDX69507 | Canola | mitochondrion | 25.6 | 58.54 |
| CDY26454 | Canola | plastid | 58.47 | 58.52 |
| TraesCS7B01G411000.1 | Wheat | nucleus | 44.02 | 57.48 |
| AT5G15700.2 | Thale cress | plastid | 59.56 | 56.9 |
| Bra008681.1-P | Field mustard | plastid | 26.59 | 54.38 |
| Bra027253.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 6.67 | 52.34 |
| Solyc02g089330.2.1 | Tomato | cytosol | 10.26 | 32.8 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.1320.10 | Gene3D:1.10.150.20 | Gene3D:1.10.287.260 | Gene3D:1.10.287.280 |
| MapMan:15.6.1.1 | Gene3D:3.30.70.370 | InterPro:DNA-dir_RNA_pol_helix_hairp_sf | InterPro:DNA-dir_Rpol_phage-type | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR024075 |
| InterPro:IPR037159 | PFAM:PF00940 | PFAM:PF14700 | ScanProsite:PS00489 | ScanProsite:PS00900 | PANTHER:PTHR10102 |
| PANTHER:PTHR10102:SF1 | InterPro:RNA_POL_N_sf | InterPro:RPOL_N | SMART:SM01311 | SUPFAM:SSF56672 | EnsemblPlantsGene:TraesCS5B01G164300 |
| EnsemblPlants:TraesCS5B01G164300.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:304284849..304294239
Molecular Weight (calculated)
112671.0 Da
IEP (calculated)
9.501
GRAVY (calculated)
-0.419
Length
1004 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLPAPTPAAE TAICPPSPPP PPPPVLLPAK ALDLMWRRLP SRRLASALLS ASAPQLPPPP LHRLLLPAPA AAPGILPPAR LLWGQPPSRF ASSSAAAAEA
0101: VSSEEVDEPH HAPEEIVRLG PNTKLPVAEA ATAGQAGKKE RRRGRGQGRQ LAELAAEHGI GYSKYVSLRQ RQIRIETEAW EQAAKEYREL LADMCEHKLA
0201: PNLPYVKSLF LGWFEPLRDQ IIAEQELVSQ RGTRASHAPY FNMLPADMMA VITMHKLMGL LMTGSGDGSV RVIQAACQIG EAVEHEVRIH KFLEKTKKKN
0301: TKEVDKVVEA VDADIAKEQE RLRKKVTDLM KKQKIRQVRH LVKKQDSTRP WGQDAHAKVG SRLIELFIET AHIQPPASQS GDSTPEIRPA FTHEMRTVAR
0401: EQQKSRRYGV IKCDPLVRQG LDRTAKHMVI PYMPMLIPPI NWTGYDKGAH LFLPSYVMRT HGARQQREAV KKAPKEQMQT IFEALDNLGS TKWRVNKKVL
0501: SIVDRIWSSG GRLADLVDRA DVSLPKKPDT EDEAELKKWR WSMRSAKKEN SERHSQRCDV ELKLAVARKM KEEAGFYYPH NLDFRGRAYP MHPYLNHLGS
0601: DLCRGVLEFS EGRPLGESGL RWLKIHLANL YGGGVDKLSY DGRIAFTENH LEDIFDSANR PLEGKRWWLE AEDPFQCLAV CMDLNEALRS PSPETVISHI
0701: PVHQDGSCNG LQHYAALGRD KLGAVAVNLV SGEKPADVYS GIAARVVEIM KRDAQKDPAK DADAARARLL VDQVDRKLVK QTVMTSVYGV TYVGAREQIK
0801: RRLKERGVIA DDSELFGASC YAAKVTLTAL GEMFEAARSI MTWLGDCAKV IACENEPVRW TTPLGLPVVQ PYRKLGRHLI KTSLQVLTLQ RETDKVMVKR
0901: QRTAFPPNFV HSLDGSHMMM TAVACKKQGL YFAGVHDSYW THACDVDTMN KILREKFVEL YDAPILENLL ESFETSFPKL KFPPLPERGN FDMKDVLQST
1001: YFFN
0101: VSSEEVDEPH HAPEEIVRLG PNTKLPVAEA ATAGQAGKKE RRRGRGQGRQ LAELAAEHGI GYSKYVSLRQ RQIRIETEAW EQAAKEYREL LADMCEHKLA
0201: PNLPYVKSLF LGWFEPLRDQ IIAEQELVSQ RGTRASHAPY FNMLPADMMA VITMHKLMGL LMTGSGDGSV RVIQAACQIG EAVEHEVRIH KFLEKTKKKN
0301: TKEVDKVVEA VDADIAKEQE RLRKKVTDLM KKQKIRQVRH LVKKQDSTRP WGQDAHAKVG SRLIELFIET AHIQPPASQS GDSTPEIRPA FTHEMRTVAR
0401: EQQKSRRYGV IKCDPLVRQG LDRTAKHMVI PYMPMLIPPI NWTGYDKGAH LFLPSYVMRT HGARQQREAV KKAPKEQMQT IFEALDNLGS TKWRVNKKVL
0501: SIVDRIWSSG GRLADLVDRA DVSLPKKPDT EDEAELKKWR WSMRSAKKEN SERHSQRCDV ELKLAVARKM KEEAGFYYPH NLDFRGRAYP MHPYLNHLGS
0601: DLCRGVLEFS EGRPLGESGL RWLKIHLANL YGGGVDKLSY DGRIAFTENH LEDIFDSANR PLEGKRWWLE AEDPFQCLAV CMDLNEALRS PSPETVISHI
0701: PVHQDGSCNG LQHYAALGRD KLGAVAVNLV SGEKPADVYS GIAARVVEIM KRDAQKDPAK DADAARARLL VDQVDRKLVK QTVMTSVYGV TYVGAREQIK
0801: RRLKERGVIA DDSELFGASC YAAKVTLTAL GEMFEAARSI MTWLGDCAKV IACENEPVRW TTPLGLPVVQ PYRKLGRHLI KTSLQVLTLQ RETDKVMVKR
0901: QRTAFPPNFV HSLDGSHMMM TAVACKKQGL YFAGVHDSYW THACDVDTMN KILREKFVEL YDAPILENLL ESFETSFPKL KFPPLPERGN FDMKDVLQST
1001: YFFN
0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N
Arabidopsis Description
DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.