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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 6
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70786 Canola cytosol, mitochondrion, nucleus 20.24 84.32
CDY33562 Canola mitochondrion 78.74 80.71
Bra004354.1-P Field mustard mitochondrion 79.65 80.64
CDX95968 Canola mitochondrion 79.65 80.64
KRH45290 Soybean cytosol, mitochondrion, nucleus 19.94 76.86
CDY04262 Canola mitochondrion 69.38 74.45
CDY07360 Canola mitochondrion 64.9 72.17
Bra004010.1-P Field mustard plastid 65.72 71.62
KRH07470 Soybean cytosol, mitochondrion, nucleus 13.94 64.62
VIT_01s0010g00690.t01 Wine grape mitochondrion 63.89 64.21
Solyc05g010660.2.1 Tomato mitochondrion 62.87 62.24
OQU90275 Sorghum mitochondrion 61.24 61.68
Zm00001d022169_P001 Maize mitochondrion 60.83 61.33
GSMUA_Achr3P28120_001 Banana mitochondrion 60.02 61.27
KRH07469 Soybean mitochondrion 49.03 60.1
TraesCS5B01G164300.1 Wheat plastid 60.83 59.56
TraesCS5D01G171600.1 Wheat plastid 60.83 59.56
TraesCS5A01G167300.2 Wheat plastid 58.39 58.87
KRH45285 Soybean mitochondrion 41.2 58.7
Os09t0246200-01 Rice mitochondrion 56.56 58.46
HORVU5Hr1G051530.5 Barley mitochondrion 60.53 56.51
AT5G15700.2 Thale cress plastid 59.31 55.47
AT2G24120.1 Thale cress plastid 54.32 53.78
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6Gene3D:1.10.1320.10Gene3D:1.10.150.20Gene3D:1.10.287.260Gene3D:1.10.287.280
MapMan:15.6.1.1Gene3D:3.30.70.370EntrezGene:843232ProteinID:AEE34874.1ArrayExpress:AT1G68990EnsemblPlantsGene:AT1G68990
RefSeq:AT1G68990TAIR:AT1G68990RefSeq:AT1G68990-TAIR-GEnsemblPlants:AT1G68990.2TAIR:AT1G68990.2Unigene:At.207
ncoils:CoilInterPro:DNA-dir_RNA_pol_helix_hairp_sfInterPro:DNA-dir_Rpol_phage-typeUniProt:F4I0I3GO:GO:0000003GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899GO:GO:0005488GO:GO:0006139
GO:GO:0006351GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009653
GO:GO:0009790GO:GO:0009791GO:GO:0009793GO:GO:0009856GO:GO:0009860GO:GO:0009908
GO:GO:0009987GO:GO:0016043GO:GO:0016049GO:GO:0016740GO:GO:0016779GO:GO:0030154
GO:GO:0040007GO:GO:0048481InterPro:IPR024075InterPro:IPR037159Symbol:MGP3RefSeq:NP_001185355.1
PFAM:PF00940PFAM:PF14700PO:PO:0000013PO:PO:0000037PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007057PO:PO:0007115
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020038PO:PO:0020100PO:PO:0025022
ScanProsite:PS00489ScanProsite:PS00900PANTHER:PTHR10102PANTHER:PTHR10102:SF1InterPro:RNA_POL_N_sfInterPro:RPOL_N
SMART:SM01311SUPFAM:SSF56672UniParc:UPI0001E92ADBSEG:seg::
Description
MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
Coordinates
chr1:-:25935351..25940925
Molecular Weight (calculated)
111769.0 Da
IEP (calculated)
8.225
GRAVY (calculated)
-0.462
Length
983 amino acids
Sequence
(BLAST)
001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSVSRI
401: VDYARHMVIP YLPMLIPPQN WTGYDQGAHF FLPSYVMRTH GAKQQRTVMK RTPKEQLEPV YEALDTLGNT KWKINKKVLS LVDRIWANGG RIGGLVDRED
501: VPIPEEPERE DQEKFKNWRW ESKKAIKQNN ERHSQRCDIE LKLEVARKMK DEEGFYYPHN VDFRGRAYPI HPYLNHLGSD LCRGILEFCE GKPLGKSGLR
601: WLKIHIANLY AGGVDKLAYE DRIAFTESHL EDIFDSSDRP LEGKRWWLNA EDPFQCLAAC INLSEALRSP FPEAAISHIP IHQDGSCNGL QHYAALGRDK
701: LGADAVNLVT GEKPADVYTE IAARVLKIMQ QDAEEDPETF PNATYAKLML DQVDRKLVKQ TVMTSVYGVT YSGARDQIKK RLKERGTFED DSLTFHASCY
801: AAKITLKALE EMFEAARAIK SWFGDCAKII ASENNAVCWT TPLGLPVVQP YRKPGRHLVK TTLQVLTLSR ETDKVMARRQ MTAFAPNFIH SLDGSHMMMT
901: AVACNRAGLS FAGVHDSFWT HACDVDVMNT ILREKFVELY EKPILENLLE SFQKSFPDIS FPPLPERGDF DLRKVLESTY FFN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.