Factsheet for Solyc05g010660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45290	Soybean	cytosol, mitochondrion, nucleus	22.26	86.67
Solyc02g089340.2.1	Tomato	cytosol, mitochondrion, nucleus	54.38	75.95
VIT_01s0010g00690.t01	Wine grape	mitochondrion	74.22	75.36
KRH07470	Soybean	cytosol, mitochondrion, nucleus	15.61	73.11
CDY70786	Canola	cytosol, mitochondrion, nucleus	16.92	71.19
GSMUA_Achr3P28120_001	Banana	mitochondrion	66.36	68.43
OQU90275	Sorghum	mitochondrion	66.57	67.73
Zm00001d022169_P001	Maize	mitochondrion	65.66	66.87
KRH07469	Soybean	mitochondrion	53.68	66.46
TraesCS5D01G171600.1	Wheat	plastid	67.07	66.33
TraesCS5B01G164300.1	Wheat	plastid	67.07	66.33
TraesCS5A01G167300.2	Wheat	plastid	64.75	65.95
KRH45285	Soybean	mitochondrion	45.52	65.51
Os09t0246200-01	Rice	mitochondrion	62.13	64.88
CDY33562	Canola	mitochondrion	62.54	64.75
CDX95968	Canola	mitochondrion	62.54	63.95
HORVU5Hr1G051530.5	Barley	mitochondrion	66.97	63.15
AT1G68990.2	Thale cress	mitochondrion	62.24	62.87
CDY04262	Canola	mitochondrion	56.8	61.57
CDY07360	Canola	mitochondrion	54.58	61.31
Solyc07g005930.2.1	Tomato	nucleus	54.98	55.04
Bra027253.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	6.75	52.34
Solyc02g089330.2.1	Tomato	cytosol	11.08	35.03

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.1320.10	Gene3D:1.10.150.20	Gene3D:1.10.287.260	Gene3D:1.10.287.280
MapMan:15.6.1.1	Gene3D:3.30.70.370	ncoils:Coil	InterPro:DNA-dir_RNA_pol_helix_hairp_sf	InterPro:DNA-dir_Rpol_phage-type	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0006351	GO:GO:0006390	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009856	GO:GO:0009860
GO:GO:0009908	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016740	GO:GO:0016779
GO:GO:0030154	GO:GO:0034245	GO:GO:0040007	GO:GO:0048481	InterPro:IPR024075	InterPro:IPR037159
UniProt:K4BXN8	PFAM:PF00940	PFAM:PF14700	ScanProsite:PS00489	ScanProsite:PS00900	PANTHER:PTHR10102
PANTHER:PTHR10102:SF1	InterPro:RNA_POL_N_sf	InterPro:RPOL_N	SMART:SM01311	SUPFAM:SSF56672	EnsemblPlantsGene:Solyc05g010660.2
EnsemblPlants:Solyc05g010660.2.1	UniParc:UPI00027671DE	SEG:seg	:	:	:

Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:K4BXN8]

Coordinates

chr5:-:4868186..4882265

Molecular Weight (calculated)

112642.0 Da

IEP (calculated)

8.344

GRAVY (calculated)

-0.478

Length

993 amino acids

Sequence
(BLAST)

001: MWRYISKQVY SRKLRNTHDS DFLGFAQSFR KTRPLQGLCE EGYRNPNLGV SQSSIFSRVN GKSRCLDGMC EDSCRNHYLG FSESSIFSRV KGDFRVCGSL
101: GVLRSYGSAA EAIASTSEED IDEIQELIEE MNKENEALKT NLQPKQPKTV GGMGIGKYNL LRRRQIKVET EAWEDAAKEY QELLMDMCEQ KLAPNLPYIK
201: SLFLGWFEPL KDAIAAEQKL CDEGKNRGAY APFFDQLPAE MMAVITMHKL MGLLMTGGGS GSARVVQAAS HIGEAIEHEA RIHRFLEKTK KNALDGSLEE
301: TAGDIMKERE RLRKKVKILM KKQKLQQVRK IVKQQDDEKP WGQDNLVKVG CRLIQILIET AYIQPPNDQL EDCPPDIRPA FMHTLKTVDT VKGSRRYGVI
401: QCDPLVRKGL DKTARHMVIP YMPMLVPPQN WSGYDRGAYL FLPSYIMRTH GAKQQREAVK RVPKKQLEPV FQALDTLGNT KWRVNKRVLG ILDRIWASGG
501: RLADLVDRED VPLPEEPDTE NEEEIKKWKW KVKAAKKENC ERHSQRCDIE LKLAVARKMK DEEGFYYPHN LDFRGRAYPM HPYLNHLGSD LCRGILEFSE
601: GRPLGKSGLR WLKIHLANVY GGGVDKLSCE GRAAFSENHV EDIFDSADRP LEGRRWWLGA EDPFQCLATC ISISEALRSP SPETSISHMP IHQDGSCNGL
701: QHYAALGRDK LGAAAVNLVA GDKPADVYSG IAARVLDIMK RDADKDPATD PNVMRARLLI NQVDRKLVKQ TVMTSVYGVT YIGARDQIKR RLKERGAIED
801: DNELFAAACY AAKTTLTALG EMFEAARSIM SWLGDCAKII AMENQPVRWT TPLGLPVVQP YRKLGRHLIK TSLQILTLQR ETDKVMVKRQ RTAFPPNFVH
901: SLDGSHMMMT AIACKEAGLS FAGVHDSYWT HASDVDQMNK ILREKFVELY DAPILENLLE SFQQSFPDLQ FPPLPERGDF DLREVLESPY FFN

Best Arabidopsis Sequence Match ( AT1G68990.1 )
(BLAST)

001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN

Arabidopsis Description

MGP3DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.